PDBe Graph Database

This page provides information on how to setup the distributed Neo4J database from PDBe as a Neo4J instance.


Interactive documentation of the data available in the PDBe graph database is available here


  • Neo4J Community/Enterprise Edition 3.5+ (Download )


  1. Download the archive
  2. Make sure Neo4J instance is not running
  3. Untar graph.db.tgz to $NEO4J_HOME$/data/databases/graph.db
  4. Start Neo4J instance

PDBe Graph data will be available in the running instance. Start exploring!