OLDERADO

OLDERADO cluster and domain composition for PDB entry 2KMN

Solution structure of peptide deformylase complexed with actinonin
Summary of Olderado results
Most representative model 4
Largest domain comprises residues Chain A: 4-8, 11-61, 69-83, 104-140
RMSD of all models in ensemble (Cα atoms) 0.6 Å

Protein domains shown as surfaces Representative models from each cluster
View in 3D View in 3D

Domain composition (NMRCore)
Domain number and colour code Residues Core Cumulative core
1 Chain A: 4-8, 11-61, 69-83, 104-140 78.3 % 78.3 %
2 Chain A: 84-86, 95-99 5.8 % 84.1 %
3 Chain A: 87-91 3.6 % 87.7 %
4 Chain A: 100-103 2.9 % 90.6 %
5 Chain A: 141-144 2.9 % 93.5 %
6 Chain A: 92-94 2.2 % 95.7 %
7 Chain A: 2-3 1.4 % 97.1 %
8 Chain A: 9-10 1.4 % 98.6 %
9 Chain A: 145-146 1.4 % 100.0 %

Cluster identification (NMRClust)
Cluster number and colour code Representative Members
1 4 2, 4, 6, 7, 11, 13, 14, 18, 19, 20
2 16 1, 9, 12, 16
3 10 3, 10, 15
 
List of outliers (subfamily with one member): 5, 8, 17