OLDERADO

OLDERADO cluster and domain composition for PDB entry 2K1S

Solution NMR structure of the folded C-terminal fragment of YiaD from Escherichia coli. Northeast Structural Genomics Consortium target ER553.
Summary of Olderado results
Most representative model 16
Largest domain comprises residues Chain A: 67-74, 101-112, 132-138
RMSD of all models in ensemble (Cα atoms) 2.5 Å

Protein domains shown as surfaces Representative models from each cluster
View in 3D View in 3D

Domain composition (NMRCore)
Domain number and colour code Residues Core Cumulative core
1 Chain A: 67-74, 101-112, 132-138 20.9 % 20.9 %
2 Chain A: 80-100 16.3 % 37.2 %
3 Chain A: 44-63 15.5 % 52.7 %
4 Chain A: 19-25, 27-34 11.6 % 64.3 %
5 Chain A: 3-14 9.3 % 73.6 %
6 Chain A: 124-131 6.2 % 79.8 %
7 Chain A: 64-66, 139-141 4.7 % 84.5 %
8 Chain A: 117-121 3.9 % 88.4 %
9 Chain A: 35-38 3.1 % 91.5 %
10 Chain A: 113-116 3.1 % 94.6 %
11 Chain A: 16-18 2.3 % 96.9 %
12 Chain A: 39-40 1.6 % 98.4 %
13 Chain A: 122-123 1.6 % 100.0 %

Cluster identification (NMRClust)
Cluster number and colour code Representative Members
1 16 1, 2, 3, 5, 6, 9, 10, 12, 13, 15, 16
2 14 4, 14, 17, 19
3 20 7, 11, 20
 
List of outliers (subfamily with one member): 8, 18