OLDERADO

OLDERADO cluster and domain composition for PDB entry 1TMR

THE STRUCTURE OF A 19 RESIDUE FRAGMENT FROM THE C-LOOP OF THE FOURTH EPIDERMAL GROWTH FACTOR-LIKE DOMAIN OF THROMBOMODULIN
Summary of Olderado results
Most representative model 5
Largest domain comprises residues Chain A: 4-11
RMSD of all models in ensemble (Cα atoms) 1.3 Å

Protein domains shown as surfaces Representative models from each cluster
View in 3D View in 3D

Domain composition (NMRCore)
Domain number and colour code Residues Core Cumulative core
1 Chain A: 4-11 44.4 % 44.4 %
2 Chain A: 2-3 11.1 % 55.5 %
3 Chain A: 12-13 11.1 % 66.7 %
4 Chain A: 14-15 11.1 % 77.8 %
5 Chain A: 16-17 11.1 % 88.9 %
6 Chain A: 18-19 11.1 % 100.0 %

Cluster identification (NMRClust)
Cluster number and colour code Representative Members
1 5 1, 5, 10
2 4 2, 3, 4
3 9 6, 9
 
List of outliers (subfamily with one member): 7, 8