OLDERADO

OLDERADO cluster and domain composition for PDB entry 1P88

Substrate-induced structural changes to the isolated N-terminal domain of 5-enolpyruvylshikimate-3-phosphate synthase
Summary of Olderado results
Most representative model 8
Largest domain comprises residues Chain A: 33-36, 80-93, 97-107, 110-126, 129-156, 171-186, 226-228
RMSD of all models in ensemble (Cα atoms) 0.3 Å

Protein domains shown as surfaces Representative models from each cluster
View in 3D View in 3D

Domain composition (NMRCore)
Domain number and colour code Residues Core Cumulative core
1 Chain A: 33-36, 80-93, 97-107, 110-126, 129-156, 171-186, 226-228 43.9 % 43.9 %
2 Chain A: 157-166, 187-194, 209-225, 229-234 19.3 % 63.2 %
3 Chain A: 28-32, 39-62, 72-77 16.5 % 79.7 %
4 Chain A: 199-208 4.7 % 84.4 %
5 Chain A: 63-71 4.2 % 88.7 %
6 Chain A: 235-240 2.8 % 91.5 %
7 Chain A: 37-38, 78-79 1.9 % 93.4 %
8 Chain A: 195-198 1.9 % 95.3 %
9 Chain A: 26-27 0.9 % 96.2 %
10 Chain A: 94-95 0.9 % 97.2 %
11 Chain A: 108-109 0.9 % 98.1 %
12 Chain A: 127-128 0.9 % 99.1 %
13 Chain A: 169-170 0.9 % 100.0 %

Cluster identification (NMRClust)
Cluster number and colour code Representative Members
1 8 1, 3, 4, 6, 8, 11
2 5 2, 5, 7
 
List of outliers (subfamily with one member): 9, 10