FunPDBe: Community-driven enrichment of PDB data

Structural and functional annotations

What is FunPDBe

FunPDBe is a project of the Protein Data Bank in Europe - Knowledge Base (PDBe-KB) with the goal to create an integrated and accessible resource of structural and functional annotations for macromolecular structure data in the Protein Data Bank (PDB). It is a collaboration between the PDBe-KB and world-leading providers of structural bioinformatics data.

The goal of FunPDBe

The project promotes interoperability, comparative analysis and exchange of structural and functional annotations by implementing common data standards and infrastructure to collect these enhanced annotations. PDBe-KB, of which FunPDBe is a flagship project, aims to significantly increase the impact of structural data globally by implementing a central sustainable data resource and a uniform data access mechanism (via FTP and REST API) for distribution of these valuable functional and structural annotations, developed by researchers. The data is to be made accessible via web interface by developing re-usable web components.

How to deposit data

PDBe-KB is open to deposition of annotations from potential collaborating data resource or scientific software developers. Please contact PDBe-KB for more details.

Participating resources

14-3-3-Pred Geoff Barton group
3D Complex Emmanuel Levy group
3DLigandSite Mark Wass group
AKID Manuela Helmer Citterich group
Arpeggio Tom Blundell group
CamKinet Toby Gibson group
canSAR Bissan Al-Lazikani group
CATH-FunSites Christine Orengo group
ChannelsDB Jaroslav Koca group
COSPI-Depth M.S. Madhusudhan group
DynaMine Wim Vranken group
FoldX Luis Serrano group
M-CSA Janet Thornton group
MetalPDB Claudia Andreini, Antonio Rosato group
Missense3D Michael Sternberg group
P2Rank David Hoksza group
POPSCOMP Franca Fraternali group
ProKinO Natarajan Kannan group
SKEMPI Iain H Moal group