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8hje

X-ray diffraction
2.85Å resolution

Vismodegib binds to the catalytical domain of human Ubiquitin-Specific Protease 28

Released:
Source organism: Homo sapiens

Function and Biology Details

Reaction catalysed:
[Thiol-dependent hydrolysis of ester, thioester, amide, peptide andisopeptide bonds formed by the C-terminal Gly of ubiquitin (a 76-residueprotein attached to proteins as an intracellular targeting signal).]
Biological process:
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
monomeric (preferred)
PDBe Complex ID:
PDB-CPX-188742 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Ubiquitin carboxyl-terminal hydrolase 28 Chain: A
Molecule details ›
Chain: A
Length: 380 amino acids
Theoretical weight: 44.43 KDa
Source organism: Homo sapiens
Expression system: Escherichia
UniProt:
  • Canonical: Q96RU2 (Residues: 150-399, 580-703; Coverage: 35%)
  • Best match: Q96RU2-3 (Residues: 150-399, 406-406)
Gene names: KIAA1515, USP28
Sequence domains: Ubiquitin carboxyl-terminal hydrolase

Ligands and Environments

1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRF BEAMLINE BL02U1
Spacegroup: R32
Unit cell:
a: 105.099Å b: 105.099Å c: 327.422Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.224 0.222 0.254
Expression system: Escherichia