› 8bg2

X-ray diffraction
2.1Å resolution

Crystal structure of the SARS-CoV-2 S RBD in complex with pT1580 scFV

Released:
DOI: 10.2210/pdb8bg2/pdb
PDB entry 8bg2 coloured by chain, front view.
PDB entry 8bg2 coloured by chain, side view.
PDB entry 8bg2 coloured by chain, top view.
Source organisms:
Entry authors: Hansen G, Ssebyatika GL, Krey T

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-235060 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
pT1375 single-chain Fv Chains: A, C
Molecule details ›
Chains: A, C
Length: 251 amino acids
Theoretical weight: 26.38 KDa
Source organism: Homo sapiens
Expression system: Drosophila melanogaster
Spike protein S1 Chains: B, D
Molecule details ›
Chains: B, D
Length: 199 amino acids
Theoretical weight: 22.36 KDa
Source organism: Severe acute respiratory syndrome coronavirus 2
Expression system: Drosophila melanogaster
UniProt:
  • Canonical: P0DTC2 (Residues: 334-527; Coverage: 15%)
Gene names: 2, S
Sequence domains: Betacoronavirus spike glycoprotein S1, receptor binding

Ligands and Environments

1 bound ligand:
Ligand NAG 2 x NAG
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SLS BEAMLINE X06SA
Spacegroup: P21
Unit cell:
a: 87.046Å b: 85.9Å c: 88.198Å
α: 90° β: 117.04° γ: 90°
R-values:
R R work R free
0.19 0.189 0.227
Expression system: Drosophila melanogaster

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