› 7xfw

X-ray diffraction
2.07Å resolution

Crystal structure of the ternary complex of Peptidoglycan recognition protein, PGRP-S with hexanoic and tartaric acids at 2.07 A resolution.

Released:
DOI: 10.2210/pdb7xfw/pdb
PDB 7xfw coloured by chain and viewed from the front.
PDB 7xfw coloured by chain and viewed from the side.
PDB 7xfw coloured by chain and viewed from the top.
Source organism: Camelus dromedarius
Entry authors: Maurya A, Singh PK, Viswanathan V, Sharma P, Sharma S, Singh TP

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Peptidoglycan recognition protein 1 Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 171 amino acids
Theoretical weight: 19.01 KDa
Source organism: Camelus dromedarius
UniProt:
  • Canonical: Q9GK12 (Residues: 23-193; Coverage: 99%)
Gene names: PGLYRP, PGLYRP1, PGRP
Sequence domains: N-acetylmuramoyl-L-alanine amidase

Ligands and Environments

6 bound ligands:
Ligand TLA 3 x TLA
Ligand EDO 6 x EDO
Ligand ACT 3 x ACT
Ligand CL 1 x CL
Ligand 6NA 1 x 6NA
Ligand GOL 1 x GOL
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE MASSIF-1
Spacegroup: I222
Unit cell:
a: 88.889Å b: 101.508Å c: 162.996Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.202 0.2 0.258

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