7tly

Electron Microscopy
3Å resolution

SARS-CoV-2 S B.1.1.529 Omicron variant (RBD + S309 Local Refinement)

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero trimer (preferred)
PDBe Complex ID:
PDB-CPX-209941 (preferred)
Entry contents:
3 distinct polypeptide molecules
Macromolecules (4 distinct):
S309 Fab heavy chain Chain: A
Molecule details ›
Chain: A
Length: 126 amino acids
Theoretical weight: 13.92 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
S309 Fab light chain Chain: B
Molecule details ›
Chain: B
Length: 214 amino acids
Theoretical weight: 23.2 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
Spike glycoprotein Chain: I
Molecule details ›
Chain: I
Length: 1274 amino acids
Theoretical weight: 141.6 KDa
Source organism: Severe acute respiratory syndrome coronavirus 2
Expression system: Severe acute respiratory syndrome coronavirus 2
UniProt:
  • Canonical: P0DTC2 (Residues: 1-211, 215-1205; Coverage: 94%)
Gene names: 2, S
Sequence domains:

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG, BMA, FUC
No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution:
Relevant EMDB volumes: EMD-25990
Expression systems:
  • Homo sapiens
  • Severe acute respiratory syndrome coronavirus 2