› 7tg6

X-ray diffraction
4.82Å resolution

[T:Ag+/Hg2+:T--(pH11-pH7; 30s in metals)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 11 and soaked in pH 7 with Ag+ and Hg2+ for 30s

Released:
DOI: 10.2210/pdb7tg6/pdb
PDB entry 7tg6 coloured by chain, front view.
PDB entry 7tg6 coloured by chain, side view.
PDB entry 7tg6 coloured by chain, top view.
Source organism: synthetic construct
Entry authors: Lu B, Vecchioni S, Seeman NC, Sha R, Ohayon YP

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero dodecamer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-122085 (preferred)
Entry contents:
4 distinct DNA molecules
Macromolecules (4 distinct):
DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*TP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3') Chain: A
Molecule details ›
Chain: A
Length: 21 nucleotides
Theoretical weight: 6.46 KDa
Source organism: synthetic construct
Expression system: Not provided
DNA (5'-D(P*CP*CP*AP*TP*AP*CP*A)-3') Chain: B
Molecule details ›
Chain: B
Length: 7 nucleotides
Theoretical weight: 2.07 KDa
Source organism: synthetic construct
Expression system: Not provided
DNA (5'-D(P*GP*GP*CP*TP*GP*CP*T)-3') Chain: C
Molecule details ›
Chain: C
Length: 7 nucleotides
Theoretical weight: 2.13 KDa
Source organism: synthetic construct
Expression system: Not provided
DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3') Chain: D
Molecule details ›
Chain: D
Length: 7 nucleotides
Theoretical weight: 2.13 KDa
Source organism: synthetic construct
Expression system: Not provided

Ligands and Environments

1 bound ligand:
Ligand HG 1 x HG
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 17-ID
Spacegroup: R3
Unit cell:
a: 106.897Å b: 106.897Å c: 89.463Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.195 0.192 0.278
Expression system: Not provided

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