X-ray diffraction
1.34Å resolution

Structure of Bdellovibrio bacteriovorus Bd1075

Entry authors: Lovering AL, Valdivia-Delgado M

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Entry contents:
1 distinct polypeptide molecule
YkuD domain-containing protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 324 amino acids
Theoretical weight: 37.3 KDa
Source organism: Bdellovibrio bacteriovorus HD100
Expression system: Escherichia coli 'BL21-Gold(DE3)pLysS AG'
  • Canonical: Q6MNZ7 (Residues: 9-332; Coverage: 100%)
Gene name: Bd1075
Sequence domains: L,D-transpeptidase catalytic domain

Ligands and Environments

No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I04
Spacegroup: P21
Unit cell:
a: 49.189Å b: 100.631Å c: 62.279Å
α: 90° β: 108.07° γ: 90°
R R work R free
0.187 0.186 0.213
Expression system: Escherichia coli 'BL21-Gold(DE3)pLysS AG'