7jro

Electron Microscopy
3.8Å resolution

Plant Mitochondrial complex IV from Vigna radiata

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero decamer (preferred)
PDBe Complex ID:
PDB-CPX-103685 (preferred)
Entry contents:
10 distinct polypeptide molecules
Macromolecules (10 distinct):
COX1 Chain: a
Molecule details ›
Chain: a
Length: 527 amino acids
Theoretical weight: 57.96 KDa
Source organism: Vigna radiata
Cytochrome c oxidase subunit 2 Chain: b
Molecule details ›
Chain: b
Length: 251 amino acids
Theoretical weight: 28.39 KDa
Source organism: Vigna radiata var. radiata
UniProt:
  • Canonical: A0A1S3TZB2 (Residues: 133-383; Coverage: 66%)
Gene name: LOC106760164
Sequence domains:
COX3 Chain: c
Molecule details ›
Chain: c
Length: 265 amino acids
Theoretical weight: 29.97 KDa
Source organism: Vigna radiata
COX4 Chain: d
Molecule details ›
Chain: d
Length: 79 amino acids
Theoretical weight: 8.81 KDa
Source organism: Vigna radiata var. radiata
UniProt:
  • Canonical: A0A1S3TNX9 (Residues: 46-124; Coverage: 64%)
Gene name: LOC106757297
Sequence domains: Protein of unknown function (DUF1138)
Cytochrome c oxidase subunit 5b-2, mitochondrial Chain: e
Molecule details ›
Chain: e
Length: 150 amino acids
Theoretical weight: 16.69 KDa
Source organism: Vigna radiata var. radiata
UniProt:
  • Canonical: A0A1S3U1E4 (Residues: 1-150; Coverage: 100%)
Gene name: LOC106760900
Sequence domains: Cytochrome c oxidase subunit Vb
Cytochrome c oxidase subunit 6a, mitochondrial Chain: f
Molecule details ›
Chain: f
Length: 100 amino acids
Theoretical weight: 11.23 KDa
Source organism: Vigna radiata var. radiata
UniProt:
  • Canonical: A0A1S3UMA0 (Residues: 1-100; Coverage: 100%)
Gene name: LOC106766916
Sequence domains: Cytochrome c oxidase subunit VIa
Cytochrome c oxidase subunit 6b-1 Chain: g
Molecule details ›
Chain: g
Length: 181 amino acids
Theoretical weight: 20.02 KDa
Source organism: Vigna radiata var. radiata
UniProt:
  • Canonical: A0A1S3VV60 (Residues: 1-181; Coverage: 100%)
Gene name: LOC106778794
Sequence domains: Cytochrome oxidase c subunit VIb
Cytochrome c oxidase subunit 5C Chain: h
Molecule details ›
Chain: h
Length: 64 amino acids
Theoretical weight: 7.12 KDa
Source organism: Vigna radiata var. radiata
UniProt:
  • Canonical: A0A1S3V319 (Residues: 1-64; Coverage: 100%)
Gene name: LOC106771138
COX7a Chain: i
Molecule details ›
Chain: i
Length: 67 amino acids
Theoretical weight: 7.62 KDa
Source organism: Vigna radiata var. radiata
UniProt:
  • Canonical: A0A1S3TUX2 (Residues: 1-67; Coverage: 100%)
Gene name: LOC106759053
Sequence domains: Cytochrome c oxidase subunit VII
SLL1 protein Chain: j
Molecule details ›
Chain: j
Length: 96 amino acids
Theoretical weight: 10.51 KDa
Source organism: Vigna radiata var. radiata
UniProt:
  • Canonical: A0A1S3V7C2 (Residues: 1-96; Coverage: 100%)
Gene name: LOC106772338

Ligands and Environments

Experiments and Validation Details

Entry percentile scores
Resolution: 3.8Å
Relevant EMDB volumes: EMD-22447