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› 7ec9

X-ray diffraction
1.8Å resolution

Structure of the Thermotoga maritima Family 5 endo-glucanase in complex with 1-deoxynojiromycin

Released:
DOI: 10.2210/pdb7ec9/pdb
PDB entry 7ec9 coloured by chain, front view.
PDB entry 7ec9 coloured by chain, side view.
PDB entry 7ec9 coloured by chain, top view.
Source organism: Thermotoga maritima MSB8
Primary publication:
Structure of an iminosugar complex of a glycoside hydrolase family 5 lichenase provides insights into the active site.
Garg P, Manoj N
Biochimie (2022)
PMID: 36084911

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-194876 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Glycoside hydrolase family 5 domain-containing protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 341 amino acids
Theoretical weight: 40.82 KDa
Source organism: Thermotoga maritima MSB8
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: Q9X274 (Residues: 1-329; Coverage: 100%)
Gene name: TM_1752
Sequence domains: Cellulase (glycosyl hydrolase family 5)

Ligands and Environments

2 bound ligands:
Ligand NOJ 2 x NOJ
Ligand IPA 2 x IPA
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: BRUKER AXS MICROSTAR
Spacegroup: P212121
Unit cell:
a: 61.33Å b: 62.28Å c: 202.69Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.142 0.141 0.168
Expression system: Escherichia coli BL21

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