7c8w

X-ray diffraction
2.77Å resolution

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (3 distinct):
Synthetic nanobody MR17 Chain: A
Molecule details ›
Chain: A
Length: 122 amino acids
Theoretical weight: 13.43 KDa
Source organism: synthetic construct
Expression system: Escherichia coli BL21(DE3)
Spike protein S1 Chain: B
Molecule details ›
Chain: B
Length: 213 amino acids
Theoretical weight: 23.75 KDa
Source organism: Severe acute respiratory syndrome coronavirus 2
Expression system: Trichoplusia ni
UniProt:
  • Canonical: P0DTC2 (Residues: 330-531; Coverage: 16%)
Gene names: 2, S
Sequence domains: Betacoronavirus spike glycoprotein S1, receptor binding

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG, FUC
1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRF BEAMLINE BL19U1
Spacegroup: P3221
Unit cell:
a: 73.691Å b: 73.691Å c: 158.577Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.211 0.205 0.267
Expression systems:
  • Escherichia coli BL21(DE3)
  • Trichoplusia ni