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Bacillus subtilis ribosome-associated quality control complex state B, multibody refinement focussed on RqcH. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO

Source organism: Bacillus subtilis subsp. subtilis str. 168
Biochemical function: RNA binding
Biological process: translation
Cellular component: ribonucleoprotein complex

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GO terms

Biochemical function:
Biological process:
Cellular component:

Sequence families

Pfam Protein families (Pfam)
PF00298
Domain description: Ribosomal protein L11, RNA binding domain
Occurring in:
  1. Large ribosomal subunit protein uL11
The deposited structure of PDB entry 7asa contains 1 copy of Pfam domain PF00298 (Ribosomal protein L11, RNA binding domain) in Large ribosomal subunit protein uL11. Showing 1 copy in chain E [auth K].

PF03946
Domain description: Ribosomal protein L11, N-terminal domain
Occurring in:
  1. Large ribosomal subunit protein uL11
The deposited structure of PDB entry 7asa contains 1 copy of Pfam domain PF03946 (Ribosomal protein L11, N-terminal domain) in Large ribosomal subunit protein uL11. Showing 1 copy in chain E [auth K].

PF01479
Domain description: S4 domain
Occurring in:
  1. Uncharacterized protein YabO
The deposited structure of PDB entry 7asa contains 1 copy of Pfam domain PF01479 (S4 domain) in Uncharacterized protein YabO. Showing 1 copy in chain B [auth 1].

PF05670
Domain description: NFACT protein RNA binding domain
Occurring in:
  1. Rqc2 homolog RqcH
The deposited structure of PDB entry 7asa contains 1 copy of Pfam domain PF05670 (NFACT protein RNA binding domain) in Rqc2 homolog RqcH. Showing 1 copy in chain A [auth 0].

PF05833
Domain description: NFACT N-terminal and middle domains
Occurring in:
  1. Rqc2 homolog RqcH
The deposited structure of PDB entry 7asa contains 1 copy of Pfam domain PF05833 (NFACT N-terminal and middle domains) in Rqc2 homolog RqcH. Showing 1 copy in chain A [auth 0].

Rfam RNA families (Rfam)
RF00005
Domain description: tRNA
Occurring in:
  1. tRNA-Ala-1-1
The deposited structure of PDB entry 7asa contains 1 copy of Rfam domain RF00005 (tRNA) in tRNA-Ala-1-1. Showing 1 copy in chain C [auth 2].

RF02541
Domain description: Bacterial large subunit ribosomal RNA
Occurring in:
  1. 23S ribosomal RNA
The deposited structure of PDB entry 7asa contains 1 copy of Rfam domain RF02541 (Bacterial large subunit ribosomal RNA) in 23S ribosomal RNA. Showing 1 copy in chain D [auth A].

InterPro InterPro annotations
IPR000911
Domain description: Ribosomal protein uL11
Occurring in:
  1. Large ribosomal subunit protein uL11
IPR036769
Domain description: Large ribosomal subunit protein uL11, C-terminal domain superfamily
Occurring in:
  1. Large ribosomal subunit protein uL11
IPR036796
Domain description: Large ribosomal subunit protein uL11, N-terminal domain superfamily
Occurring in:
  1. Large ribosomal subunit protein uL11
IPR002942
Domain description: RNA-binding S4 domain
Occurring in:
  1. Uncharacterized protein YabO
IPR020785
Domain description: Large ribosomal subunit protein uL11, conserved site
Occurring in:
  1. Large ribosomal subunit protein uL11
IPR020783
Domain description: Large ribosomal subunit protein uL11, C-terminal
Occurring in:
  1. Large ribosomal subunit protein uL11
IPR020784
Domain description: Large ribosomal subunit protein uL11, N-terminal
Occurring in:
  1. Large ribosomal subunit protein uL11
IPR006519
Domain description: Large ribosomal subunit protein uL11, bacterial-type
Occurring in:
  1. Large ribosomal subunit protein uL11
IPR036986
Domain description: RNA-binding S4 domain superfamily
Occurring in:
  1. Uncharacterized protein YabO
IPR025490
Domain description: RNA-binding protein, HP1423 type
Occurring in:
  1. Uncharacterized protein YabO
IPR008532
Domain description: NFACT, RNA-binding domain
Occurring in:
  1. Rqc2 homolog RqcH
IPR043682
Domain description: Rqc2 homolog RqcH, bacterial
Occurring in:
  1. Rqc2 homolog RqcH

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