› 6zc3

X-ray diffraction
1.67Å resolution

Small-molecule inhibitors of the PDZ domain of Dishevelled proteins interrupt Wnt signalling

Released:
DOI: 10.2210/pdb6zc3/pdb
PDB entry 6zc3 coloured by chain, front view.
PDB entry 6zc3 coloured by chain, side view.
PDB entry 6zc3 coloured by chain, top view.
Source organism: Homo sapiens
Primary publication:
Small-molecule inhibitors of the PDZ domain of Dishevelled proteins interrupt Wnt signalling
Roske Y, Heinemann U, Oschkinat H, Kamdem N, Kovalskyy D, Platonov MO, Balinskyi OM, Kreuchwig A, Saupe J, Fang L, Diehl A, Schmieder P, Krause G, Rademann J, Birchmeier W
J. Magn. Reson. (2021)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-187830 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Segment polarity protein dishevelled homolog DVL-3 Chains: A, B
Molecule details ›
Chains: A, B
Length: 95 amino acids
Theoretical weight: 10.2 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: Q92997 (Residues: 243-335; Coverage: 13%)
Gene names: DVL3, KIAA0208
Sequence domains: PDZ domain

Ligands and Environments

2 bound ligands:
Ligand EDO 1 x EDO
Ligand JOR 2 x JOR
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: BESSY BEAMLINE 14.1
Spacegroup: P61
Unit cell:
a: 87.276Å b: 87.276Å c: 57.844Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.169 0.167 0.208
Expression system: Escherichia coli

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