6z3j

X-ray diffraction
1.65Å resolution

Repulsive Guidance Molecule B (RGMB) in complex with Growth Differentiation Factor 5 (GDF5) (crystal form 1)

Released:
Source organism: Homo sapiens

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero tetramer (preferred)
PDBe Complex ID:
PDB-CPX-154936 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Growth/differentiation factor 5 Chains: A, B
Molecule details ›
Chains: A, B
Length: 117 amino acids
Theoretical weight: 13.36 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: P43026 (Residues: 387-501; Coverage: 24%)
Gene names: BMP14, CDMP1, GDF5
Sequence domains: Transforming growth factor beta like domain
Repulsive guidance molecule B Chains: C, D
Molecule details ›
Chains: C, D
Length: 96 amino acids
Theoretical weight: 10.53 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: Q6NW40 (Residues: 53-136; Coverage: 21%)
Gene name: RGMB
Sequence domains: Repulsive guidance molecule (RGM) N-terminus

Ligands and Environments

No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I03
Spacegroup: P21
Unit cell:
a: 36.48Å b: 127.75Å c: 39.91Å
α: 90° β: 99.32° γ: 90°
R-values:
R R work R free
0.192 0.191 0.219
Expression systems:
  • Escherichia coli
  • Homo sapiens