› 6ydr

X-ray diffraction
1.34Å resolution

Crystal structure of Mengla Virus VP30 C-terminal domain

Released:
DOI: 10.2210/pdb6ydr/pdb
PDB entry 6ydr coloured by chain, front view.
PDB entry 6ydr coloured by chain, side view.
PDB entry 6ydr coloured by chain, top view.
Source organism: Dianlovirus menglaense
Entry authors: Tomas Gilabert O, Ferrero DS, Verdaguer N

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-104989 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Transcriptional activator VP30 Chain: A
Molecule details ›
Chain: A
Length: 152 amino acids
Theoretical weight: 16.75 KDa
Source organism: Dianlovirus menglaense
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: A0A3S8UVN5 (Residues: 142-293; Coverage: 52%)
Gene name: VP30
Sequence domains: Ebola virus-specific transcription factor VP30

Ligands and Environments

2 bound ligands:
Ligand GOL 1 x GOL
Ligand SO4 1 x SO4
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ALBA BEAMLINE XALOC
Spacegroup: P3212
Unit cell:
a: 73.062Å b: 73.062Å c: 53.459Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.128 0.127 0.155
Expression system: Escherichia coli BL21

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