› 6y6i

X-ray diffraction
1.92Å resolution

lipopolysaccharide outer core galactosyltransferase WaaB and UDP complex

Released:
DOI: 10.2210/pdb6y6i/pdb
PDB entry 6y6i coloured by chain, front view.
PDB entry 6y6i coloured by chain, side view.
PDB entry 6y6i coloured by chain, top view.
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Entry authors: Zhang ZY, Ashworth G, Wang ZS, Zhu XF, Dong CJ

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-170414 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Lipopolysaccharide 1,6-galactosyltransferase Chain: A
Molecule details ›
Chain: A
Length: 361 amino acids
Theoretical weight: 41.07 KDa
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Expression system: Escherichia coli
UniProt:
  • Canonical: Q06994 (Residues: 1-359; Coverage: 100%)
Gene names: STM3719, rfaB, waaB
Sequence domains: Glycosyl transferases group 1

Ligands and Environments

1 bound ligand:
Ligand UDP 1 x UDP
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I03
Spacegroup: P43212
Unit cell:
a: 104.44Å b: 104.44Å c: 89.64Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.166 0.164 0.213
Expression system: Escherichia coli

Quick links