X-ray diffraction
1.77Å resolution

Crystal structure of S. cerevisiae Atg8 in complex with Ede1 (1220-1247)


Function and Biology Details

Biochemical function:
Biological process:
Cellular component:

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Autophagy-related protein 8 Chains: A, B
Molecule details ›
Chains: A, B
Length: 118 amino acids
Theoretical weight: 13.6 KDa
Source organism: Saccharomyces cerevisiae
Expression system: Escherichia coli
  • Canonical: P38182 (Residues: 1-116; Coverage: 99%)
Gene names: APG8, ATG8, AUT7, CVT5, YBL0732, YBL078C
Sequence domains: Autophagy protein Atg8 ubiquitin like
EH domain-containing and endocytosis protein 1 Chains: C, D
Molecule details ›
Chains: C, D
Length: 28 amino acids
Theoretical weight: 3.17 KDa
Source organism: Saccharomyces cerevisiae
Expression system: Not provided
  • Canonical: P34216 (Residues: 1220-1247; Coverage: 2%)
Gene names: BUD15, EDE1, YBL047C, YBL0501, YBL0520

Ligands and Environments

No bound ligands
2 modified residues:

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 22-BM
Spacegroup: P43
Unit cell:
a: 49.642Å b: 49.642Å c: 123.446Å
α: 90° β: 90° γ: 90°
R R work R free
0.177 0.176 0.203
Expression systems:
  • Escherichia coli
  • Not provided