6wvi

X-ray diffraction
2.4Å resolution

VKOR-like from Takifugu rubripes

Released:

Function and Biology Details

Reaction catalysed:
Phylloquinol + a protein with a disulfide bond = phylloquinone + a protein with reduced L-cysteine residues
Biochemical function:
Biological process:
  • not assigned
Cellular component:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Green fluorescent protein; Vitamin-K-epoxide reductase (warfarin-sensitive) Chain: A
Molecule details ›
Chain: A
Length: 414 amino acids
Theoretical weight: 46.78 KDa
Source organisms: Expression system: Komagataella pastoris
UniProt:
  • Canonical: K0NYR4 (Residues: 64-145; Coverage: 35%)
  • Canonical: Q6TEK8 (Residues: 7-175; Coverage: 97%)
  • Canonical: P42212 (Residues: 1-63, 146-238; Coverage: 66%)
Gene names: GFP, Vkorc1l1
Sequence domains:

Ligands and Environments

1 bound ligand:
1 modified residue:

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 24-ID-C
Spacegroup: C2
Unit cell:
a: 153.639Å b: 49.064Å c: 84.326Å
α: 90° β: 112.73° γ: 90°
R-values:
R R work R free
0.199 0.197 0.235
Expression system: Komagataella pastoris