› › Function and Biology

Escherichia coli transcription-translation complex C5 (TTC-C5) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Source organism: Escherichia coli
Biochemical function: structural constituent of ribosome
Biological process: translation
Cellular component: cytoplasm

Quick links

EC 2.7.7.6: DNA-directed RNA polymerase

Reaction catalysed:
Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1)
Systematic name:
Nucleoside-triphosphate:RNA nucleotidyltransferase (DNA-directed)
Alternative Name(s):
  • C RNA formation factors
  • C ribonucleic acid formation factors
  • DNA-dependent RNA nucleotidyltransferase
  • DNA-dependent RNA polymerase
  • DNA-dependent ribonucleate nucleotidyltransferase
  • Deoxyribonucleic acid-dependent ribonucleic acid polymerase
  • RNA nucleotidyltransferase
  • RNA nucleotidyltransferase (DNA-directed)
  • RNA polymerase
  • RNA polymerase I
  • RNA polymerase II
  • RNA polymerase III
  • RNA transcriptase
  • Ribonucleate nucleotidyltransferase
  • Ribonucleate polymerase
  • Ribonucleic acid nucleotidyltransferase
  • Ribonucleic acid polymerase
  • Ribonucleic acid transcriptase
  • Ribonucleic polymerase
  • Ribonucleic transcriptase
  • Transcriptase

GO terms

Biochemical function:
Biological process:
Cellular component:

Sequence families

Pfam Protein families (Pfam)
PF00575
Domain description: S1 RNA binding domain
Occurring in:
  1. Small ribosomal subunit protein bS1
The deposited structure of PDB entry 6vyy contains 6 copies of Pfam domain PF00575 (S1 RNA binding domain) in Small ribosomal subunit protein bS1. Showing 6 copies in chain V [auth H] (some of the copies are out of the observed residue ranges!).

PF00347
Domain description: Ribosomal protein L6
Occurring in:
  1. Large ribosomal subunit protein uL6
The deposited structure of PDB entry 6vyy contains 2 copies of Pfam domain PF00347 (Ribosomal protein L6) in Large ribosomal subunit protein uL6. Showing 2 copies in chain CB [auth p].

PF00623
Domain description: RNA polymerase Rpb1, domain 2
Occurring in:
  1. DNA-directed RNA polymerase subunit beta'
The deposited structure of PDB entry 6vyy contains 2 copies of Pfam domain PF00623 (RNA polymerase Rpb1, domain 2) in DNA-directed RNA polymerase subunit beta'. Showing 2 copies in chain N [auth AE].

PF04561
Domain description: RNA polymerase Rpb2, domain 2
Occurring in:
  1. DNA-directed RNA polymerase subunit beta
The deposited structure of PDB entry 6vyy contains 2 copies of Pfam domain PF04561 (RNA polymerase Rpb2, domain 2) in DNA-directed RNA polymerase subunit beta. Showing 2 copies in chain J [auth AA].

PF00467
Domain description: KOW motif
Occurring in:
  1. Large ribosomal subunit protein uL24
  2. Transcription termination/antitermination protein NusG
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF00467 (KOW motif) in Large ribosomal subunit protein uL24. Showing 1 copy in chain D [auth 3].
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF00467 (KOW motif) in Transcription termination/antitermination protein NusG. Showing 1 copy in chain K [auth AB] (this domain is out of the observed residue ranges!).

PF00453
Domain description: Ribosomal protein L20
Occurring in:
  1. Large ribosomal subunit protein bL20
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF00453 (Ribosomal protein L20) in Large ribosomal subunit protein bL20. Showing 1 copy in chain MB [auth z].

PF01245
Domain description: Ribosomal protein L19
Occurring in:
  1. Large ribosomal subunit protein bL19
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF01245 (Ribosomal protein L19) in Large ribosomal subunit protein bL19. Showing 1 copy in chain LB [auth y].

PF00861
Domain description: Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
Occurring in:
  1. Large ribosomal subunit protein uL18
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF00861 (Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast) in Large ribosomal subunit protein uL18. Showing 1 copy in chain KB [auth x].

PF01196
Domain description: Ribosomal protein L17
Occurring in:
  1. Large ribosomal subunit protein bL17
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF01196 (Ribosomal protein L17) in Large ribosomal subunit protein bL17. Showing 1 copy in chain JB [auth w].

PF00252
Domain description: Ribosomal protein L16p/L10e
Occurring in:
  1. Large ribosomal subunit protein uL16
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF00252 (Ribosomal protein L16p/L10e) in Large ribosomal subunit protein uL16. Showing 1 copy in chain IB [auth v].

PF00828
Domain description: Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
Occurring in:
  1. Large ribosomal subunit protein uL15
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF00828 (Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A) in Large ribosomal subunit protein uL15. Showing 1 copy in chain HB [auth u].

PF00238
Domain description: Ribosomal protein L14p/L23e
Occurring in:
  1. Large ribosomal subunit protein uL14
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF00238 (Ribosomal protein L14p/L23e) in Large ribosomal subunit protein uL14. Showing 1 copy in chain GB [auth t].

PF00572
Domain description: Ribosomal protein L13
Occurring in:
  1. Large ribosomal subunit protein uL13
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF00572 (Ribosomal protein L13) in Large ribosomal subunit protein uL13. Showing 1 copy in chain FB [auth s].

PF03948
Domain description: Ribosomal protein L9, C-terminal domain
Occurring in:
  1. Large ribosomal subunit protein bL9
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF03948 (Ribosomal protein L9, C-terminal domain) in Large ribosomal subunit protein bL9. Showing 1 copy in chain EB [auth r].

PF01281
Domain description: Ribosomal protein L9, N-terminal domain
Occurring in:
  1. Large ribosomal subunit protein bL9
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF01281 (Ribosomal protein L9, N-terminal domain) in Large ribosomal subunit protein bL9. Showing 1 copy in chain EB [auth r].

PF00444
Domain description: Ribosomal protein L36
Occurring in:
  1. Large ribosomal subunit protein bL36A
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF00444 (Ribosomal protein L36) in Large ribosomal subunit protein bL36A. Showing 1 copy in chain DB [auth q].

PF01632
Domain description: Ribosomal protein L35
Occurring in:
  1. Large ribosomal subunit protein bL35
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF01632 (Ribosomal protein L35) in Large ribosomal subunit protein bL35. Showing 1 copy in chain BB [auth o].

PF00673
Domain description: ribosomal L5P family C-terminus
Occurring in:
  1. Large ribosomal subunit protein uL5
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF00673 (ribosomal L5P family C-terminus) in Large ribosomal subunit protein uL5. Showing 1 copy in chain AB [auth n].

PF00281
Domain description: Ribosomal protein L5
Occurring in:
  1. Large ribosomal subunit protein uL5
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF00281 (Ribosomal protein L5) in Large ribosomal subunit protein uL5. Showing 1 copy in chain AB [auth n].

PF00468
Domain description: Ribosomal protein L34
Occurring in:
  1. Large ribosomal subunit protein bL34
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF00468 (Ribosomal protein L34) in Large ribosomal subunit protein bL34. Showing 1 copy in chain ZA [auth m].

PF00573
Domain description: Ribosomal protein L4/L1 family
Occurring in:
  1. Large ribosomal subunit protein uL4
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF00573 (Ribosomal protein L4/L1 family) in Large ribosomal subunit protein uL4. Showing 1 copy in chain YA [auth l].

PF00471
Domain description: Ribosomal protein L33
Occurring in:
  1. Large ribosomal subunit protein bL33
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF00471 (Ribosomal protein L33) in Large ribosomal subunit protein bL33. Showing 1 copy in chain XA [auth k].

PF00297
Domain description: Ribosomal protein L3
Occurring in:
  1. Large ribosomal subunit protein uL3
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF00297 (Ribosomal protein L3) in Large ribosomal subunit protein uL3. Showing 1 copy in chain WA [auth j].

PF01783
Domain description: Ribosomal L32p protein family
Occurring in:
  1. Large ribosomal subunit protein bL32
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF01783 (Ribosomal L32p protein family) in Large ribosomal subunit protein bL32. Showing 1 copy in chain VA [auth i].

PF03947
Domain description: Ribosomal Proteins L2, C-terminal domain
Occurring in:
  1. Large ribosomal subunit protein uL2
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF03947 (Ribosomal Proteins L2, C-terminal domain) in Large ribosomal subunit protein uL2. Showing 1 copy in chain UA [auth h].

PF00181
Domain description: Ribosomal Proteins L2, RNA binding domain
Occurring in:
  1. Large ribosomal subunit protein uL2
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF00181 (Ribosomal Proteins L2, RNA binding domain) in Large ribosomal subunit protein uL2. Showing 1 copy in chain UA [auth h].

PF01197
Domain description: Ribosomal protein L31
Occurring in:
  1. Large ribosomal subunit protein bL31
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF01197 (Ribosomal protein L31) in Large ribosomal subunit protein bL31. Showing 1 copy in chain TA [auth g].

PF00327
Domain description: Ribosomal protein L30p/L7e
Occurring in:
  1. Large ribosomal subunit protein uL30
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF00327 (Ribosomal protein L30p/L7e) in Large ribosomal subunit protein uL30. Showing 1 copy in chain SA [auth f].

PF00831
Domain description: Ribosomal L29 protein
Occurring in:
  1. Large ribosomal subunit protein uL29
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF00831 (Ribosomal L29 protein) in Large ribosomal subunit protein uL29. Showing 1 copy in chain RA [auth e].

PF00830
Domain description: Ribosomal L28 family
Occurring in:
  1. Large ribosomal subunit protein bL28
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF00830 (Ribosomal L28 family) in Large ribosomal subunit protein bL28. Showing 1 copy in chain PA [auth c].

PF01016
Domain description: Ribosomal L27 protein
Occurring in:
  1. Large ribosomal subunit protein bL27
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF01016 (Ribosomal L27 protein) in Large ribosomal subunit protein bL27. Showing 1 copy in chain OA [auth b].

PF00416
Domain description: Ribosomal protein S13/S18
Occurring in:
  1. Small ribosomal subunit protein uS13
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF00416 (Ribosomal protein S13/S18) in Small ribosomal subunit protein uS13. Showing 1 copy in chain LA [auth X].

PF00203
Domain description: Ribosomal protein S19
Occurring in:
  1. Small ribosomal subunit protein uS19
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF00203 (Ribosomal protein S19) in Small ribosomal subunit protein uS19. Showing 1 copy in chain KA [auth W].

PF00366
Domain description: Ribosomal protein S17
Occurring in:
  1. Small ribosomal subunit protein uS17
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF00366 (Ribosomal protein S17) in Small ribosomal subunit protein uS17. Showing 1 copy in chain JA [auth V].

PF00886
Domain description: Ribosomal protein S16
Occurring in:
  1. Small ribosomal subunit protein bS16
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF00886 (Ribosomal protein S16) in Small ribosomal subunit protein bS16. Showing 1 copy in chain IA [auth U].

PF00312
Domain description: Ribosomal protein S15
Occurring in:
  1. Small ribosomal subunit protein uS15
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF00312 (Ribosomal protein S15) in Small ribosomal subunit protein uS15. Showing 1 copy in chain HA [auth T].

PF00253
Domain description: Ribosomal protein S14p/S29e
Occurring in:
  1. Small ribosomal subunit protein uS14
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF00253 (Ribosomal protein S14p/S29e) in Small ribosomal subunit protein uS14. Showing 1 copy in chain GA [auth S].

PF00164
Domain description: Ribosomal protein S12/S23
Occurring in:
  1. Small ribosomal subunit protein uS12
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF00164 (Ribosomal protein S12/S23) in Small ribosomal subunit protein uS12. Showing 1 copy in chain FA [auth R].

PF00411
Domain description: Ribosomal protein S11
Occurring in:
  1. Small ribosomal subunit protein uS11
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF00411 (Ribosomal protein S11) in Small ribosomal subunit protein uS11. Showing 1 copy in chain EA [auth Q].

PF00338
Domain description: Ribosomal protein S10p/S20e
Occurring in:
  1. Small ribosomal subunit protein uS10
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF00338 (Ribosomal protein S10p/S20e) in Small ribosomal subunit protein uS10. Showing 1 copy in chain DA [auth P].

PF00380
Domain description: Ribosomal protein S9/S16
Occurring in:
  1. Small ribosomal subunit protein uS9
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF00380 (Ribosomal protein S9/S16) in Small ribosomal subunit protein uS9. Showing 1 copy in chain CA [auth O].

PF00410
Domain description: Ribosomal protein S8
Occurring in:
  1. Small ribosomal subunit protein uS8
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF00410 (Ribosomal protein S8) in Small ribosomal subunit protein uS8. Showing 1 copy in chain BA [auth N].

PF00177
Domain description: Ribosomal protein S7p/S5e
Occurring in:
  1. Small ribosomal subunit protein uS7
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF00177 (Ribosomal protein S7p/S5e) in Small ribosomal subunit protein uS7. Showing 1 copy in chain AA [auth M].

PF01250
Domain description: Ribosomal protein S6
Occurring in:
  1. Small ribosomal subunit protein bS6
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF01250 (Ribosomal protein S6) in Small ribosomal subunit protein bS6. Showing 1 copy in chain Z [auth L].

PF03719
Domain description: Ribosomal protein S5, C-terminal domain
Occurring in:
  1. Small ribosomal subunit protein uS5
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF03719 (Ribosomal protein S5, C-terminal domain) in Small ribosomal subunit protein uS5. Showing 1 copy in chain Y [auth K].

PF00333
Domain description: Ribosomal protein S5, N-terminal domain
Occurring in:
  1. Small ribosomal subunit protein uS5
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF00333 (Ribosomal protein S5, N-terminal domain) in Small ribosomal subunit protein uS5. Showing 1 copy in chain Y [auth K].

PF01479
Domain description: S4 domain
Occurring in:
  1. Small ribosomal subunit protein uS4
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF01479 (S4 domain) in Small ribosomal subunit protein uS4. Showing 1 copy in chain X [auth J].

PF00163
Domain description: Ribosomal protein S4/S9 N-terminal domain
Occurring in:
  1. Small ribosomal subunit protein uS4
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF00163 (Ribosomal protein S4/S9 N-terminal domain) in Small ribosomal subunit protein uS4. Showing 1 copy in chain X [auth J].

PF00189
Domain description: Ribosomal protein S3, C-terminal domain
Occurring in:
  1. Small ribosomal subunit protein uS3
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF00189 (Ribosomal protein S3, C-terminal domain) in Small ribosomal subunit protein uS3. Showing 1 copy in chain W [auth I].

PF07650
Domain description: KH domain
Occurring in:
  1. Small ribosomal subunit protein uS3
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF07650 (KH domain) in Small ribosomal subunit protein uS3. Showing 1 copy in chain W [auth I].

PF00318
Domain description: Ribosomal protein S2
Occurring in:
  1. Small ribosomal subunit protein uS2
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF00318 (Ribosomal protein S2) in Small ribosomal subunit protein uS2. Showing 1 copy in chain U [auth G].

PF01165
Domain description: Ribosomal protein S21
Occurring in:
  1. Small ribosomal subunit protein bS21
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF01165 (Ribosomal protein S21) in Small ribosomal subunit protein bS21. Showing 1 copy in chain T [auth F].

PF01649
Domain description: Ribosomal protein S20
Occurring in:
  1. Small ribosomal subunit protein bS20
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF01649 (Ribosomal protein S20) in Small ribosomal subunit protein bS20. Showing 1 copy in chain S [auth E].

PF01084
Domain description: Ribosomal protein S18
Occurring in:
  1. Small ribosomal subunit protein bS18
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF01084 (Ribosomal protein S18) in Small ribosomal subunit protein bS18. Showing 1 copy in chain Q [auth C].

PF01192
Domain description: RNA polymerase Rpb6
Occurring in:
  1. DNA-directed RNA polymerase subunit omega
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF01192 (RNA polymerase Rpb6) in DNA-directed RNA polymerase subunit omega. Showing 1 copy in chain O [auth AF].

PF04998
Domain description: RNA polymerase Rpb1, domain 5
Occurring in:
  1. DNA-directed RNA polymerase subunit beta'
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF04998 (RNA polymerase Rpb1, domain 5) in DNA-directed RNA polymerase subunit beta'. Showing 1 copy in chain N [auth AE].

PF05000
Domain description: RNA polymerase Rpb1, domain 4
Occurring in:
  1. DNA-directed RNA polymerase subunit beta'
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF05000 (RNA polymerase Rpb1, domain 4) in DNA-directed RNA polymerase subunit beta'. Showing 1 copy in chain N [auth AE].

PF04983
Domain description: RNA polymerase Rpb1, domain 3
Occurring in:
  1. DNA-directed RNA polymerase subunit beta'
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF04983 (RNA polymerase Rpb1, domain 3) in DNA-directed RNA polymerase subunit beta'. Showing 1 copy in chain N [auth AE].

PF04997
Domain description: RNA polymerase Rpb1, domain 1
Occurring in:
  1. DNA-directed RNA polymerase subunit beta'
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF04997 (RNA polymerase Rpb1, domain 1) in DNA-directed RNA polymerase subunit beta'. Showing 1 copy in chain N [auth AE].

PF03118
Domain description: Bacterial RNA polymerase, alpha chain C terminal domain
Occurring in:
  1. DNA-directed RNA polymerase subunit alpha
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF03118 (Bacterial RNA polymerase, alpha chain C terminal domain) in DNA-directed RNA polymerase subunit alpha. Showing 1 copy in chain L [auth AC] (this domain is out of the observed residue ranges!).

PF01000
Domain description: RNA polymerase Rpb3/RpoA insert domain
Occurring in:
  1. DNA-directed RNA polymerase subunit alpha
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF01000 (RNA polymerase Rpb3/RpoA insert domain) in DNA-directed RNA polymerase subunit alpha. Showing 1 copy in chain L [auth AC].

PF01193
Domain description: RNA polymerase Rpb3/Rpb11 dimerisation domain
Occurring in:
  1. DNA-directed RNA polymerase subunit alpha
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF01193 (RNA polymerase Rpb3/Rpb11 dimerisation domain) in DNA-directed RNA polymerase subunit alpha. Showing 1 copy in chain L [auth AC].

PF02357
Domain description: Transcription termination factor nusG
Occurring in:
  1. Transcription termination/antitermination protein NusG
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF02357 (Transcription termination factor nusG) in Transcription termination/antitermination protein NusG. Showing 1 copy in chain K [auth AB].

PF04560
Domain description: RNA polymerase Rpb2, domain 7
Occurring in:
  1. DNA-directed RNA polymerase subunit beta
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF04560 (RNA polymerase Rpb2, domain 7) in DNA-directed RNA polymerase subunit beta. Showing 1 copy in chain J [auth AA].

PF00562
Domain description: RNA polymerase Rpb2, domain 6
Occurring in:
  1. DNA-directed RNA polymerase subunit beta
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF00562 (RNA polymerase Rpb2, domain 6) in DNA-directed RNA polymerase subunit beta. Showing 1 copy in chain J [auth AA].

PF10385
Domain description: RNA polymerase beta subunit external 1 domain
Occurring in:
  1. DNA-directed RNA polymerase subunit beta
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF10385 (RNA polymerase beta subunit external 1 domain) in DNA-directed RNA polymerase subunit beta. Showing 1 copy in chain J [auth AA].

PF04565
Domain description: RNA polymerase Rpb2, domain 3
Occurring in:
  1. DNA-directed RNA polymerase subunit beta
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF04565 (RNA polymerase Rpb2, domain 3) in DNA-directed RNA polymerase subunit beta. Showing 1 copy in chain J [auth AA].

PF04563
Domain description: RNA polymerase beta subunit
Occurring in:
  1. DNA-directed RNA polymerase subunit beta
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF04563 (RNA polymerase beta subunit) in DNA-directed RNA polymerase subunit beta. Showing 1 copy in chain J [auth AA].

PF01386
Domain description: Ribosomal L25p family
Occurring in:
  1. Large ribosomal subunit protein bL25
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF01386 (Ribosomal L25p family) in Large ribosomal subunit protein bL25. Showing 1 copy in chain E [auth 4].

PF17136
Domain description: Ribosomal proteins 50S L24/mitochondrial 39S L24
Occurring in:
  1. Large ribosomal subunit protein uL24
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF17136 (Ribosomal proteins 50S L24/mitochondrial 39S L24) in Large ribosomal subunit protein uL24. Showing 1 copy in chain D [auth 3].

PF00276
Domain description: Ribosomal protein L23
Occurring in:
  1. Large ribosomal subunit protein uL23
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF00276 (Ribosomal protein L23) in Large ribosomal subunit protein uL23. Showing 1 copy in chain C [auth 2].

PF00237
Domain description: Ribosomal protein L22p/L17e
Occurring in:
  1. Large ribosomal subunit protein uL22
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF00237 (Ribosomal protein L22p/L17e) in Large ribosomal subunit protein uL22. Showing 1 copy in chain B [auth 1].

PF00829
Domain description: Ribosomal prokaryotic L21 protein
Occurring in:
  1. Large ribosomal subunit protein bL21
The deposited structure of PDB entry 6vyy contains 1 copy of Pfam domain PF00829 (Ribosomal prokaryotic L21 protein) in Large ribosomal subunit protein bL21. Showing 1 copy in chain A [auth 0].

Rfam RNA families (Rfam)
RF00005
Domain description: tRNA
Occurring in:
  1. E-site and P-site tRNA (fMet)
The deposited structure of PDB entry 6vyy contains 2 copies of Rfam domain RF00005 (tRNA) in E-site and P-site tRNA (fMet). Showing 1 copy in chain I [auth A].

RF00177
Domain description: Bacterial small subunit ribosomal RNA
Occurring in:
  1. 16S ribosomal RNA
The deposited structure of PDB entry 6vyy contains 1 copy of Rfam domain RF00177 (Bacterial small subunit ribosomal RNA) in 16S ribosomal RNA. Showing 1 copy in chain R [auth D].

RF02541
Domain description: Bacterial large subunit ribosomal RNA
Occurring in:
  1. 23S ribosomal RNA
The deposited structure of PDB entry 6vyy contains 1 copy of Rfam domain RF02541 (Bacterial large subunit ribosomal RNA) in 23S ribosomal RNA. Showing 1 copy in chain NA [auth a].

RF00001
Domain description: 5S ribosomal RNA
Occurring in:
  1. 5S ribosomal RNA
The deposited structure of PDB entry 6vyy contains 1 copy of Rfam domain RF00001 (5S ribosomal RNA) in 5S ribosomal RNA. Showing 1 copy in chain QA [auth d].

InterPro InterPro annotations
IPR012340
Domain description: Nucleic acid-binding, OB-fold
Occurring in:
  1. Small ribosomal subunit protein bS1
  2. Small ribosomal subunit protein uS12
  3. Small ribosomal subunit protein uS17
  4. Large ribosomal subunit protein uL2
IPR003029
Domain description: S1 domain
Occurring in:
  1. Small ribosomal subunit protein bS1
IPR005813
Domain description: Large ribosomal subunit protein bL20
Occurring in:
  1. Large ribosomal subunit protein bL20
IPR005679
Domain description: Ribosomal protein uS12, bacterial-type
Occurring in:
  1. Small ribosomal subunit protein uS12
IPR035104
Domain description: Ribosomal protein S1-like
Occurring in:
  1. Small ribosomal subunit protein bS1
IPR001865
Domain description: Small ribosomal subunit protein uS2
Occurring in:
  1. Small ribosomal subunit protein uS2
IPR001911
Domain description: Small ribosomal subunit protein bS21
Occurring in:
  1. Small ribosomal subunit protein bS21
IPR001648
Domain description: Small ribosomal subunit protein bS18
Occurring in:
  1. Small ribosomal subunit protein bS18
IPR001857
Domain description: Large ribosomal subunit protein bL19
Occurring in:
  1. Large ribosomal subunit protein bL19
IPR000114
Domain description: Large ribosomal subunit protein uL16, bacterial-type
Occurring in:
  1. Large ribosomal subunit protein uL16
IPR002150
Domain description: Large ribosomal subunit protein bL31 type A/B
Occurring in:
  1. Large ribosomal subunit protein bL31
IPR001684
Domain description: Large ribosomal subunit protein bL27
Occurring in:
  1. Large ribosomal subunit protein bL27
IPR002222
Domain description: Small ribosomal subunit protein uS19
Occurring in:
  1. Small ribosomal subunit protein uS19
IPR001706
Domain description: Large ribosomal subunit protein bL35
Occurring in:
  1. Large ribosomal subunit protein bL35
IPR001848
Domain description: Small ribosomal subunit protein uS10
Occurring in:
  1. Small ribosomal subunit protein uS10
IPR005822
Domain description: Large ribosomal subunit protein uL13
Occurring in:
  1. Large ribosomal subunit protein uL13
IPR019906
Domain description: Large ribosomal subunit protein uL6, bacterial-type
Occurring in:
  1. Large ribosomal subunit protein uL6
IPR005996
Domain description: Large ribosomal subunit protein uL30, bacterial-type
Occurring in:
  1. Large ribosomal subunit protein uL30
IPR000266
Domain description: Small ribosomal subunit protein uS17
Occurring in:
  1. Small ribosomal subunit protein uS17
IPR001062
Domain description: Transcription antitermination protein, NusG
Occurring in:
  1. Transcription termination/antitermination protein NusG
IPR000456
Domain description: Large ribosomal subunit protein bL17
Occurring in:
  1. Large ribosomal subunit protein bL17
IPR000589
Domain description: Small ribosomal subunit protein uS15
Occurring in:
  1. Small ribosomal subunit protein uS15
IPR006032
Domain description: Small ribosomal subunit protein uS12
Occurring in:
  1. Small ribosomal subunit protein uS12
IPR001971
Domain description: Small ribosomal subunit protein uS11
Occurring in:
  1. Small ribosomal subunit protein uS11
IPR002583
Domain description: Small ribosomal subunit protein bS20
Occurring in:
  1. Small ribosomal subunit protein bS20
IPR036643
Domain description: DNA-directed RNA polymerase, insert domain superfamily
Occurring in:
  1. DNA-directed RNA polymerase subunit alpha
IPR011263
Domain description: DNA-directed RNA polymerase, RpoA/D/Rpb3-type
Occurring in:
  1. DNA-directed RNA polymerase subunit alpha
IPR036603
Domain description: RNA polymerase, RBP11-like subunit
Occurring in:
  1. DNA-directed RNA polymerase subunit alpha
IPR011773
Domain description: DNA-directed RNA polymerase, alpha subunit
Occurring in:
  1. DNA-directed RNA polymerase subunit alpha
IPR008991
Domain description: Translation protein SH3-like domain superfamily
Occurring in:
  1. Large ribosomal subunit protein uL24
  2. Transcription termination/antitermination protein NusG
  3. Large ribosomal subunit protein uL2
  4. Large ribosomal subunit protein bL19
IPR005824
Domain description: KOW
Occurring in:
  1. Large ribosomal subunit protein uL24
  2. Transcription termination/antitermination protein NusG
IPR013005
Domain description: Large ribosomal subunit protein uL4-like
Occurring in:
  1. Large ribosomal subunit protein uL4
IPR001705
Domain description: Large ribosomal subunit protein bL33
Occurring in:
  1. Large ribosomal subunit protein bL33
IPR019927
Domain description: Large ribosomal subunit protein uL3, bacterial/organelle-type
Occurring in:
  1. Large ribosomal subunit protein uL3
IPR002677
Domain description: Large ribosomal subunit protein bL32
Occurring in:
  1. Large ribosomal subunit protein bL32
IPR002171
Domain description: Large ribosomal subunit protein uL2
Occurring in:
  1. Large ribosomal subunit protein uL2
IPR001854
Domain description: Large ribosomal subunit protein uL29
Occurring in:
  1. Large ribosomal subunit protein uL29
IPR001892
Domain description: Small ribosomal subunit protein uS13
Occurring in:
  1. Small ribosomal subunit protein uS13
IPR000307
Domain description: Small ribosomal subunit protein bS16
Occurring in:
  1. Small ribosomal subunit protein bS16
IPR005290
Domain description: Small ribosomal subunit protein uS15, bacterial-type
Occurring in:
  1. Small ribosomal subunit protein uS15
IPR000630
Domain description: Small ribosomal subunit protein uS8
Occurring in:
  1. Small ribosomal subunit protein uS8
IPR000529
Domain description: Small ribosomal subunit protein bS6
Occurring in:
  1. Small ribosomal subunit protein bS6
IPR005706
Domain description: Small ribosomal subunit protein uS2, bacteria/mitochondria/plastid
Occurring in:
  1. Small ribosomal subunit protein uS2
IPR003716
Domain description: DNA-directed RNA polymerase, omega subunit
Occurring in:
  1. DNA-directed RNA polymerase subunit omega
IPR003256
Domain description: Large ribosomal subunit protein uL24
Occurring in:
  1. Large ribosomal subunit protein uL24
IPR014722
Domain description: Large ribosomal subunit protein uL2, domain 2
Occurring in:
  1. Large ribosomal subunit protein uL24
  2. Transcription termination/antitermination protein NusG
  3. Large ribosomal subunit protein uL2
IPR013025
Domain description: Large ribosomal subunit protein uL23-like
Occurring in:
  1. Large ribosomal subunit protein uL23
IPR035566
Domain description: Ribosomal protein bL20, C-terminal
Occurring in:
  1. Large ribosomal subunit protein bL20
IPR004389
Domain description: Large ribosomal subunit protein uL18, bacterial-type
Occurring in:
  1. Large ribosomal subunit protein uL18
IPR005484
Domain description: Large ribosomal subunit protein uL18
Occurring in:
  1. Large ribosomal subunit protein uL18
IPR036373
Domain description: Large ribosomal subunit protein bL17 superfamily
Occurring in:
  1. Large ribosomal subunit protein bL17
IPR020798
Domain description: Large ribosomal subunit protein uL16, conserved site
Occurring in:
  1. Large ribosomal subunit protein uL16
IPR036920
Domain description: Large ribosomal subunit protein uL16 superfamily
Occurring in:
  1. Large ribosomal subunit protein uL16
IPR005749
Domain description: Large ribosomal subunit protein uL15, bacterial-type
Occurring in:
  1. Large ribosomal subunit protein uL15
IPR036853
Domain description: Large ribosomal subunit protein uL14 superfamily
Occurring in:
  1. Large ribosomal subunit protein uL14
IPR000218
Domain description: Large ribosomal subunit protein uL14
Occurring in:
  1. Large ribosomal subunit protein uL14
IPR036899
Domain description: Large ribosomal subunit protein uL13 superfamily
Occurring in:
  1. Large ribosomal subunit protein uL13
IPR036791
Domain description: Large ribosomal subunit protein bL9, C-terminal domain superfamily
Occurring in:
  1. Large ribosomal subunit protein bL9
IPR020070
Domain description: Large ribosomal subunit protein bL9, N-terminal
Occurring in:
  1. Large ribosomal subunit protein bL9
IPR000473
Domain description: Large ribosomal subunit protein bL36
Occurring in:
  1. Large ribosomal subunit protein bL36A
IPR020040
Domain description: Large ribosomal subunit protein uL6, alpha-beta domain
Occurring in:
  1. Large ribosomal subunit protein uL6
IPR036789
Domain description: Large ribosomal subunit protein uL6-like, alpha-beta domain superfamily
Occurring in:
  1. Large ribosomal subunit protein uL6
IPR037229
Domain description: Large ribosomal subunit protein bL35 superfamily
Occurring in:
  1. Large ribosomal subunit protein bL35
IPR022803
Domain description: Large ribosomal subunit protein uL5 domain superfamily
Occurring in:
  1. Large ribosomal subunit protein uL5
IPR002132
Domain description: Large ribosomal subunit protein uL5
Occurring in:
  1. Large ribosomal subunit protein uL5
IPR023574
Domain description: Large ribosomal subunit protein uL4 domain superfamily
Occurring in:
  1. Large ribosomal subunit protein uL4
IPR011332
Domain description: Zinc-binding ribosomal protein
Occurring in:
  1. Large ribosomal subunit protein bL32
  2. Large ribosomal subunit protein bL33
IPR022669
Domain description: Large ribosomal subunit protein uL2, C-terminal
Occurring in:
  1. Large ribosomal subunit protein uL2
IPR005880
Domain description: Large ribosomal subunit protein uL2, bacterial/organellar-type
Occurring in:
  1. Large ribosomal subunit protein uL2
IPR036919
Domain description: Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamily
Occurring in:
  1. Large ribosomal subunit protein uL30
IPR034704
Domain description: Large ribosomal subunit protein bL28/bL31-like superfamily
Occurring in:
  1. Large ribosomal subunit protein bL28
  2. Large ribosomal subunit protein bL31
IPR026569
Domain description: Large ribosomal subunit protein bL28
Occurring in:
  1. Large ribosomal subunit protein bL28
IPR001383
Domain description: Large ribosomal subunit protein bL28, bacterial-type
Occurring in:
  1. Large ribosomal subunit protein bL28
IPR023575
Domain description: Small ribosomal subunit protein uS19, superfamily
Occurring in:
  1. Small ribosomal subunit protein uS19
IPR019984
Domain description: Small ribosomal subunit protein uS17, bacteria/chloroplast
Occurring in:
  1. Small ribosomal subunit protein uS17
IPR023803
Domain description: Small ribosomal subunit protein bS16 domain superfamily
Occurring in:
  1. Small ribosomal subunit protein bS16
IPR001209
Domain description: Small ribosomal subunit protein uS14
Occurring in:
  1. Small ribosomal subunit protein uS14
IPR027486
Domain description: Small ribosomal subunit protein uS10 domain
Occurring in:
  1. Small ribosomal subunit protein uS10
IPR036838
Domain description: Small ribosomal subunit protein uS10 domain superfamily
Occurring in:
  1. Small ribosomal subunit protein uS10
IPR000754
Domain description: Small ribosomal subunit protein uS9
Occurring in:
  1. Small ribosomal subunit protein uS9
IPR000235
Domain description: Small ribosomal subunit protein uS7
Occurring in:
  1. Small ribosomal subunit protein uS7
IPR036823
Domain description: Small ribosomal subunit protein uS7 domain superfamily
Occurring in:
  1. Small ribosomal subunit protein uS7
IPR005717
Domain description: Small ribosomal subunit protein uS7, bacterial/organellar-type
Occurring in:
  1. Small ribosomal subunit protein uS7
IPR020814
Domain description: Small ribosomal subunit protein bS6, plastid/chloroplast
Occurring in:
  1. Small ribosomal subunit protein bS6
IPR020568
Domain description: Ribosomal protein uS5 domain 2-type superfamily
Occurring in:
  1. Small ribosomal subunit protein uS5
  2. Small ribosomal subunit protein uS9
IPR014721
Domain description: Small ribosomal subunit protein uS5 domain 2-type fold, subgroup
Occurring in:
  1. Small ribosomal subunit protein uS5
  2. Small ribosomal subunit protein uS9
IPR005712
Domain description: Small ribosomal subunit protein uS5, bacterial-type
Occurring in:
  1. Small ribosomal subunit protein uS5
IPR002942
Domain description: RNA-binding S4 domain
Occurring in:
  1. Small ribosomal subunit protein uS4
IPR005709
Domain description: Small ribosomal subunit protein uS4, bacterial-type
Occurring in:
  1. Small ribosomal subunit protein uS4
IPR036419
Domain description: Ribosomal protein S3, C-terminal domain superfamily
Occurring in:
  1. Small ribosomal subunit protein uS3
IPR004044
Domain description: K Homology domain, type 2
Occurring in:
  1. Small ribosomal subunit protein uS3
IPR005704
Domain description: Small ribosomal subunit protein uS3, bacterial-type
Occurring in:
  1. Small ribosomal subunit protein uS3
IPR000110
Domain description: Small ribosomal subunit protein bS1
Occurring in:
  1. Small ribosomal subunit protein bS1
IPR018130
Domain description: Small ribosomal subunit protein uS2, conserved site
Occurring in:
  1. Small ribosomal subunit protein uS2
IPR036510
Domain description: Small ribosomal subunit protein bS20 superfamily
Occurring in:
  1. Small ribosomal subunit protein bS20
IPR036870
Domain description: Small ribosomal subunit protein bS18 superfamily
Occurring in:
  1. Small ribosomal subunit protein bS18
IPR006110
Domain description: RNA polymerase, subunit omega/Rpo6/RPB6
Occurring in:
  1. DNA-directed RNA polymerase subunit omega
IPR036161
Domain description: RPB6/omega subunit-like superfamily
Occurring in:
  1. DNA-directed RNA polymerase subunit omega
IPR000722
Domain description: RNA polymerase, alpha subunit
Occurring in:
  1. DNA-directed RNA polymerase subunit beta'
IPR012754
Domain description: DNA-directed RNA polymerase, subunit beta-prime, bacterial type
Occurring in:
  1. DNA-directed RNA polymerase subunit beta'
IPR011260
Domain description: RNA polymerase, alpha subunit, C-terminal
Occurring in:
  1. DNA-directed RNA polymerase subunit alpha
IPR011262
Domain description: DNA-directed RNA polymerase, insert domain
Occurring in:
  1. DNA-directed RNA polymerase subunit alpha
IPR006645
Domain description: NusG-like, N-terminal
Occurring in:
  1. Transcription termination/antitermination protein NusG
IPR036735
Domain description: NusG, N-terminal domain superfamily
Occurring in:
  1. Transcription termination/antitermination protein NusG
IPR007642
Domain description: RNA polymerase Rpb2, domain 2
Occurring in:
  1. DNA-directed RNA polymerase subunit beta
IPR015712
Domain description: DNA-directed RNA polymerase, subunit 2
Occurring in:
  1. DNA-directed RNA polymerase subunit beta
IPR010243
Domain description: DNA-directed RNA polymerase beta subunit, bacterial-type
Occurring in:
  1. DNA-directed RNA polymerase subunit beta
IPR029751
Domain description: Large ribosomal subunit protein bL25, L25 domain
Occurring in:
  1. Large ribosomal subunit protein bL25
IPR001063
Domain description: Large ribosomal subunit protein uL22
Occurring in:
  1. Large ribosomal subunit protein uL22
IPR036394
Domain description: Ribosomal protein uL22 superfamily
Occurring in:
  1. Large ribosomal subunit protein uL22
IPR005727
Domain description: Large ribosomal subunit protein uL22, bacterial/chloroplast-type
Occurring in:
  1. Large ribosomal subunit protein uL22
IPR001787
Domain description: Large ribosomal subunit protein bL21
Occurring in:
  1. Large ribosomal subunit protein bL21
IPR018257
Domain description: Large ribosomal subunit protein bL19, conserved site
Occurring in:
  1. Large ribosomal subunit protein bL19
IPR038657
Domain description: Large ribosomal subunit protein bL19 superfamily
Occurring in:
  1. Large ribosomal subunit protein bL19
IPR047859
Domain description: Large ribosomal subunit protein bL17, conserved site
Occurring in:
  1. Large ribosomal subunit protein bL17
IPR016180
Domain description: Large ribosomal subunit protein uL16 domain
Occurring in:
  1. Large ribosomal subunit protein uL16
IPR047873
Domain description: Large ribosomal subunit protein uL16
Occurring in:
  1. Large ribosomal subunit protein uL16
IPR001196
Domain description: Large ribosomal subunit protein uL15, conserved site
Occurring in:
  1. Large ribosomal subunit protein uL15
IPR021131
Domain description: Large ribosomal subunit protein uL15/eL18
Occurring in:
  1. Large ribosomal subunit protein uL15
IPR036227
Domain description: Large ribosomal subunit protein uL15/eL18 superfamily
Occurring in:
  1. Large ribosomal subunit protein uL15
IPR030878
Domain description: Large ribosomal subunit protein uL15
Occurring in:
  1. Large ribosomal subunit protein uL15
IPR019972
Domain description: Large ribosomal subunit protein uL14, conserved site
Occurring in:
  1. Large ribosomal subunit protein uL14
IPR005745
Domain description: Large ribosomal subunit protein uL14, bacterial-type
Occurring in:
  1. Large ribosomal subunit protein uL14
IPR023563
Domain description: Large ribosomal subunit protein uL13, conserved site
Occurring in:
  1. Large ribosomal subunit protein uL13
IPR005823
Domain description: Large ribosomal subunit protein uL13, bacterial-type
Occurring in:
  1. Large ribosomal subunit protein uL13
IPR020069
Domain description: Large ribosomal subunit protein bL9, C-terminal
Occurring in:
  1. Large ribosomal subunit protein bL9
IPR036935
Domain description: Large ribosomal subunit protein bL9, N-terminal domain superfamily
Occurring in:
  1. Large ribosomal subunit protein bL9
IPR020594
Domain description: Large ribosomal subunit protein bL9, bacteria/chloroplast
Occurring in:
  1. Large ribosomal subunit protein bL9
IPR009027
Domain description: Large ribosomal subunit protein bL9/RNase H1, N-terminal
Occurring in:
  1. Large ribosomal subunit protein bL9
IPR000244
Domain description: Large ribosomal subunit protein bL9
Occurring in:
  1. Large ribosomal subunit protein bL9
IPR035977
Domain description: Large ribosomal subunit protein bL36 superfamily
Occurring in:
  1. Large ribosomal subunit protein bL36A
IPR002358
Domain description: Large ribosomal subunit protein uL6, conserved site
Occurring in:
  1. Large ribosomal subunit protein uL6
IPR000702
Domain description: Large ribosomal subunit protein uL6-like
Occurring in:
  1. Large ribosomal subunit protein uL6
IPR018265
Domain description: Large ribosomal subunit protein bL35, conserved site
Occurring in:
  1. Large ribosomal subunit protein bL35
IPR021137
Domain description: Large ribosomal subunit protein bL35-like
Occurring in:
  1. Large ribosomal subunit protein bL35
IPR031309
Domain description: Large ribosomal subunit protein uL5, C-terminal
Occurring in:
  1. Large ribosomal subunit protein uL5
IPR020929
Domain description: Large ribosomal subunit protein uL5, conserved site
Occurring in:
  1. Large ribosomal subunit protein uL5
IPR031310
Domain description: Large ribosomal subunit protein uL5, N-terminal
Occurring in:
  1. Large ribosomal subunit protein uL5
IPR020930
Domain description: Large ribosomal subunit protein uL5, bacterial-type
Occurring in:
  1. Large ribosomal subunit protein uL5
IPR020939
Domain description: Large ribosomal subunit protein bL34, conserved site
Occurring in:
  1. Large ribosomal subunit protein bL34
IPR000271
Domain description: Large ribosomal subunit protein bL34
Occurring in:
  1. Large ribosomal subunit protein bL34
IPR002136
Domain description: Large ribosomal subunit protein uL4
Occurring in:
  1. Large ribosomal subunit protein uL4
IPR018264
Domain description: Large ribosomal subunit protein bL33, conserved site
Occurring in:
  1. Large ribosomal subunit protein bL33
IPR038584
Domain description: Large ribosomal subunit protein bL33 superfamily
Occurring in:
  1. Large ribosomal subunit protein bL33
IPR019926
Domain description: Large ribosomal subunit protein uL3, conserved site
Occurring in:
  1. Large ribosomal subunit protein uL3
IPR000597
Domain description: Large ribosomal subunit protein uL3
Occurring in:
  1. Large ribosomal subunit protein uL3
IPR009000
Domain description: Translation protein, beta-barrel domain superfamily
Occurring in:
  1. Large ribosomal subunit protein uL3
IPR044957
Domain description: Large ribosomal subunit protein bL32, bacterial type
Occurring in:
  1. Large ribosomal subunit protein bL32
IPR022671
Domain description: Large ribosomal subunit protein uL2, conserved site
Occurring in:
  1. Large ribosomal subunit protein uL2
IPR014726
Domain description: Large ribosomal subunit protein uL2, domain 3
Occurring in:
  1. Large ribosomal subunit protein uL2
IPR022666
Domain description: Large ribosomal subunit protein uL2, RNA-binding domain
Occurring in:
  1. Large ribosomal subunit protein uL2
IPR042105
Domain description: Large ribosomal subunit protein bL31 superfamily
Occurring in:
  1. Large ribosomal subunit protein bL31
IPR027491
Domain description: Large ribosomal subunit protein bL31 type A
Occurring in:
  1. Large ribosomal subunit protein bL31
IPR018038
Domain description: Large ribosomal subunit protein uL30, conserved site
Occurring in:
  1. Large ribosomal subunit protein uL30
IPR016082
Domain description: Large ribosomal subunit protein uL30-like, ferredoxin-like fold domain
Occurring in:
  1. Large ribosomal subunit protein uL30
IPR018254
Domain description: Large ribosomal subunit protein uL29, conserved site
Occurring in:
  1. Large ribosomal subunit protein uL29
IPR036049
Domain description: Large ribosomal subunit protein uL29 superfamily
Occurring in:
  1. Large ribosomal subunit protein uL29
IPR037147
Domain description: Large ribosomal subunit protein bL28 superfamily
Occurring in:
  1. Large ribosomal subunit protein bL28
IPR018261
Domain description: Large ribosomal subunit protein bL27, conserved site
Occurring in:
  1. Large ribosomal subunit protein bL27
IPR018269
Domain description: Small ribosomal subunit protein uS13, conserved site
Occurring in:
  1. Small ribosomal subunit protein uS13
IPR027437
Domain description: Small ribosomal subunit protein uS13, C-terminal
Occurring in:
  1. Small ribosomal subunit protein uS13
IPR019980
Domain description: Small ribosomal subunit protein uS13, bacterial-type
Occurring in:
  1. Small ribosomal subunit protein uS13
IPR010979
Domain description: Small ribosomal subunit protein uS13-like, H2TH
Occurring in:
  1. Small ribosomal subunit protein uS13
IPR020934
Domain description: Small ribosomal subunit protein uS19, conserved site
Occurring in:
  1. Small ribosomal subunit protein uS19
IPR005732
Domain description: Small ribosomal subunit protein uS19, bacterial-type
Occurring in:
  1. Small ribosomal subunit protein uS19
IPR019979
Domain description: Small ribosomal subunit protein uS17, conserved site
Occurring in:
  1. Small ribosomal subunit protein uS17
IPR020592
Domain description: Small ribosomal subunit protein bS16, conserved site
Occurring in:
  1. Small ribosomal subunit protein bS16
IPR009068
Domain description: uS15/NS1, RNA-binding domain superfamily
Occurring in:
  1. Small ribosomal subunit protein uS15
IPR018271
Domain description: Small ribosomal subunit protein uS14, conserved site
Occurring in:
  1. Small ribosomal subunit protein uS14
IPR023036
Domain description: Small ribosomal subunit protein uS14, bacteria/plastid
Occurring in:
  1. Small ribosomal subunit protein uS14
IPR018102
Domain description: Small ribosomal subunit protein uS11, conserved site
Occurring in:
  1. Small ribosomal subunit protein uS11
IPR019981
Domain description: Small ribosomal subunit protein uS11, bacterial-type
Occurring in:
  1. Small ribosomal subunit protein uS11
IPR036967
Domain description: Small ribosomal subunit protein uS11 superfamily
Occurring in:
  1. Small ribosomal subunit protein uS11
IPR018268
Domain description: Small ribosomal subunit protein uS10, conserved site
Occurring in:
  1. Small ribosomal subunit protein uS10
IPR020574
Domain description: Small ribosomal subunit protein uS9, conserved site
Occurring in:
  1. Small ribosomal subunit protein uS9
IPR023035
Domain description: Small ribosomal subunit protein uS9, bacterial/plastid
Occurring in:
  1. Small ribosomal subunit protein uS9
IPR047863
Domain description: Small ribosomal subunit protein uS8, conserved site
Occurring in:
  1. Small ribosomal subunit protein uS8
IPR035987
Domain description: Small ribosomal subunit protein uS8 superfamily
Occurring in:
  1. Small ribosomal subunit protein uS8
IPR020606
Domain description: Small ribosomal subunit protein uS7, conserved site
Occurring in:
  1. Small ribosomal subunit protein uS7
IPR023798
Domain description: Small ribosomal subunit protein uS7 domain
Occurring in:
  1. Small ribosomal subunit protein uS7
IPR020815
Domain description: Small ribosomal subunit protein bS6, conserved site
Occurring in:
  1. Small ribosomal subunit protein bS6
IPR035980
Domain description: Small ribosomal subunit protein bS6 superfamily
Occurring in:
  1. Small ribosomal subunit protein bS6
IPR014717
Domain description: Translation elongation factor EF1B/small ribosomal subunit protein bS6
Occurring in:
  1. Small ribosomal subunit protein bS6
IPR005324
Domain description: Small ribosomal subunit protein uS5, C-terminal
Occurring in:
  1. Small ribosomal subunit protein uS5
IPR018192
Domain description: Small ribosomal subunit protein uS5, N-terminal, conserved site
Occurring in:
  1. Small ribosomal subunit protein uS5
IPR013810
Domain description: Small ribosomal subunit protein uS5, N-terminal
Occurring in:
  1. Small ribosomal subunit protein uS5
IPR000851
Domain description: Small ribosomal subunit protein uS5
Occurring in:
  1. Small ribosomal subunit protein uS5
IPR036986
Domain description: RNA-binding S4 domain superfamily
Occurring in:
  1. Small ribosomal subunit protein uS4
IPR018079
Domain description: Small ribosomal subunit protein uS4, conserved site
Occurring in:
  1. Small ribosomal subunit protein uS4
IPR022801
Domain description: Small ribosomal subunit protein uS4
Occurring in:
  1. Small ribosomal subunit protein uS4
IPR001912
Domain description: Small ribosomal subunit protein uS4, N-terminal
Occurring in:
  1. Small ribosomal subunit protein uS4
IPR018280
Domain description: Small ribosomal subunit protein uS3, conserved site
Occurring in:
  1. Small ribosomal subunit protein uS3
IPR001351
Domain description: Small ribosomal subunit protein uS3, C-terminal
Occurring in:
  1. Small ribosomal subunit protein uS3
IPR004087
Domain description: K Homology domain
Occurring in:
  1. Small ribosomal subunit protein uS3
IPR015946
Domain description: K homology domain-like, alpha/beta
Occurring in:
  1. Small ribosomal subunit protein uS3
IPR009019
Domain description: K homology domain superfamily, prokaryotic type
Occurring in:
  1. Small ribosomal subunit protein uS3
IPR023591
Domain description: Small ribosomal subunit protein uS2, flavodoxin-like domain superfamily
Occurring in:
  1. Small ribosomal subunit protein uS2
IPR038380
Domain description: Small ribosomal subunit protein bS21 superfamily
Occurring in:
  1. Small ribosomal subunit protein bS21
IPR018278
Domain description: Small ribosomal subunit protein bS21, conserved site
Occurring in:
  1. Small ribosomal subunit protein bS21
IPR018275
Domain description: Small ribosomal subunit protein bS18, conserved site
Occurring in:
  1. Small ribosomal subunit protein bS18
IPR007081
Domain description: RNA polymerase Rpb1, domain 5
Occurring in:
  1. DNA-directed RNA polymerase subunit beta'
IPR007083
Domain description: RNA polymerase Rpb1, domain 4
Occurring in:
  1. DNA-directed RNA polymerase subunit beta'
IPR038120
Domain description: RNA polymerase Rpb1, funnel domain superfamily
Occurring in:
  1. DNA-directed RNA polymerase subunit beta'
IPR042102
Domain description: RNA polymerase Rpb1, domain 3 superfamily
Occurring in:
  1. DNA-directed RNA polymerase subunit beta'
IPR007066
Domain description: RNA polymerase Rpb1, domain 3
Occurring in:
  1. DNA-directed RNA polymerase subunit beta'
IPR006592
Domain description: RNA polymerase, N-terminal
Occurring in:
  1. DNA-directed RNA polymerase subunit beta'
IPR045867
Domain description: DNA-directed RNA polymerase, subunit beta-prime
Occurring in:
  1. DNA-directed RNA polymerase subunit beta'
IPR007080
Domain description: RNA polymerase Rpb1, domain 1
Occurring in:
  1. DNA-directed RNA polymerase subunit beta'
IPR044893
Domain description: RNA polymerase Rpb1, clamp domain superfamily
Occurring in:
  1. DNA-directed RNA polymerase subunit beta'
IPR015869
Domain description: Transcription antitermination protein, NusG, bacteria, conserved site
Occurring in:
  1. Transcription termination/antitermination protein NusG
IPR047050
Domain description: NusG, N-terminal
Occurring in:
  1. Transcription termination/antitermination protein NusG
IPR043425
Domain description: NusG-like
Occurring in:
  1. Transcription termination/antitermination protein NusG
IPR007641
Domain description: RNA polymerase Rpb2, domain 7
Occurring in:
  1. DNA-directed RNA polymerase subunit beta
IPR007121
Domain description: RNA polymerase, beta subunit, conserved site
Occurring in:
  1. DNA-directed RNA polymerase subunit beta
IPR037033
Domain description: DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily
Occurring in:
  1. DNA-directed RNA polymerase subunit beta
IPR014724
Domain description: RNA polymerase Rpb2, OB-fold
Occurring in:
  1. DNA-directed RNA polymerase subunit beta
IPR007120
Domain description: DNA-directed RNA polymerase, subunit 2, hybrid-binding domain
Occurring in:
  1. DNA-directed RNA polymerase subunit beta
IPR019462
Domain description: DNA-directed RNA polymerase, beta subunit, external 1 domain
Occurring in:
  1. DNA-directed RNA polymerase subunit beta
IPR042107
Domain description: DNA-directed RNA polymerase, beta subunit, external 1 domain superfamily
Occurring in:
  1. DNA-directed RNA polymerase subunit beta
IPR007645
Domain description: RNA polymerase Rpb2, domain 3
Occurring in:
  1. DNA-directed RNA polymerase subunit beta
IPR037034
Domain description: RNA polymerase Rpb2, domain 2 superfamily
Occurring in:
  1. DNA-directed RNA polymerase subunit beta
IPR007644
Domain description: RNA polymerase, beta subunit, protrusion
Occurring in:
  1. DNA-directed RNA polymerase subunit beta
IPR020055
Domain description: Ribosomal protein bL25, short-form
Occurring in:
  1. Large ribosomal subunit protein bL25
IPR020056
Domain description: Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminal
Occurring in:
  1. Large ribosomal subunit protein bL25
IPR011035
Domain description: Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamily
Occurring in:
  1. Large ribosomal subunit protein bL25
IPR041988
Domain description: Large ribosomal subunit protein uL24, KOW domain
Occurring in:
  1. Large ribosomal subunit protein uL24
IPR005825
Domain description: Large ribosomal subunit protein uL24, conserved site
Occurring in:
  1. Large ribosomal subunit protein uL24
IPR001014
Domain description: Large ribosomal subunit protein uL23, conserved site
Occurring in:
  1. Large ribosomal subunit protein uL23
IPR012678
Domain description: Ribosomal protein uL23/eL15/eS24 core domain superfamily
Occurring in:
  1. Large ribosomal subunit protein uL23
IPR012677
Domain description: Nucleotide-binding alpha-beta plait domain superfamily
Occurring in:
  1. Large ribosomal subunit protein uL23
IPR018260
Domain description: Large ribosomal subunit protein uL22, conserved site
Occurring in:
  1. Large ribosomal subunit protein uL22
IPR047867
Domain description: Large ribosomal subunit protein uL22, bacterial/organelle-type
Occurring in:
  1. Large ribosomal subunit protein uL22
IPR018258
Domain description: Large ribosomal subunit protein bL21, conserved site
Occurring in:
  1. Large ribosomal subunit protein bL21
IPR036164
Domain description: Large ribosomal subunit protein bL21-like superfamily
Occurring in:
  1. Large ribosomal subunit protein bL21
IPR028909
Domain description: Large ribosomal subunit protein bL21-like
Occurring in:
  1. Large ribosomal subunit protein bL21

Quick links