› 6vdu

X-ray diffraction
1.98Å resolution

Crystal Structure of Dehaloperoxidase B in Complex with cofactor Iron(III) Deuteroporphyrin IX and Substrate Trichlorophenol

Released:
DOI: 10.2210/pdb6vdu/pdb
PDB 6vdu coloured by chain and viewed from the front.
PDB 6vdu coloured by chain and viewed from the side.
PDB 6vdu coloured by chain and viewed from the top.
Source organism: Amphitrite ornata
Entry authors: Ghiladi RA, de Serrano VS, McGuire A, Malewschik T

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
monomeric (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
GLOBIN domain-containing protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 137 amino acids
Theoretical weight: 15.41 KDa
Source organism: Amphitrite ornata
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: Q9NAV7 (Residues: 2-138; Coverage: 99%)
Sequence domains: Globin

Ligands and Environments

5 bound ligands:
Ligand FDE 2 x FDE
Ligand T6C 2 x T6C
Ligand EDO 4 x EDO
Ligand PEG 1 x PEG
Ligand SO4 2 x SO4
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 22-BM
Spacegroup: P212121
Unit cell:
a: 59.174Å b: 67.901Å c: 67.905Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.201 0.197 0.261
Expression system: Escherichia coli BL21

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