› 6sx1

X-ray diffraction
1.25Å resolution

Structure of Rib Standard, a Rib domain from Lactobacillus acidophilus

Released:
DOI: 10.2210/pdb6sx1/pdb
PDB entry 6sx1 coloured by chain, front view.
PDB entry 6sx1 coloured by chain, side view.
PDB entry 6sx1 coloured by chain, top view.
Source organism: Lactobacillus acidophilus NCFM
Primary publication:
Defining the remarkable structural malleability of a bacterial surface protein Rib domain implicated in infection.
Whelan F, Lafita A, Griffiths SC, Cooper REM, Whittingham JL, Turkenburg JP, Manfield IW, St John AN, Paci E, Bateman A, Potts JR
Proc Natl Acad Sci U S A (2019)
PMID: 31818940

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-177098 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Long Rib domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 83 amino acids
Theoretical weight: 8.73 KDa
Source organism: Lactobacillus acidophilus NCFM
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q5FIM8 (Residues: 1269-1351; Coverage: 5%)
Gene name: LBA1633
Sequence domains: Rib domain

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I04
Spacegroup: P212121
Unit cell:
a: 30.183Å b: 32.644Å c: 62.811Å
α: 90° β: 90° γ: 90°
Expression system: Escherichia coli BL21(DE3)

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Citations

4 review citations

Understanding Factors in Group B Streptococcus Late-Onset Disease.
Berardi et al. (2021)
3 more

1 mention without citation

Defining the remarkable structural malleability of a bacterial surface protein Rib domain implicated in infection.
Whelan et al. (2019)