6sv4

Electron Microscopy
3.3Å resolution

The cryo-EM structure of SDD1-stalled collided trisome.

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero 242-mer (preferred)
Entry contents:
75 distinct polypeptide molecules
7 distinct RNA molecules
Macromolecules (82 distinct):
60S ribosomal protein L2-A Chains: AW, XW, zW
Molecule details ›
Chains: AW, XW, zW
Length: 254 amino acids
Theoretical weight: 27.46 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0CX45 (Residues: 1-254; Coverage: 100%)
Gene names: RPL2A, RPL5B, YFR031BC, YFR031C-A
Sequence domains:
60S ribosomal protein L3 Chains: BA, YA, ZA
Molecule details ›
Chains: BA, YA, ZA
Length: 387 amino acids
Theoretical weight: 43.85 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P14126 (Residues: 1-387; Coverage: 100%)
Gene names: MAK8, RPL3, TCM1, YOR063W, YOR29-14
Sequence domains: Ribosomal protein L3
60S ribosomal protein L4-A Chains: BE, YE, ZE
Molecule details ›
Chains: BE, YE, ZE
Length: 362 amino acids
Theoretical weight: 39.16 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P10664 (Residues: 1-362; Coverage: 100%)
Gene names: RPL2, RPL2A, RPL4A, YBR0315, YBR031W
Sequence domains:
60S ribosomal protein L5 Chains: BI, YI, ZI
Molecule details ›
Chains: BI, YI, ZI
Length: 297 amino acids
Theoretical weight: 33.76 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P26321 (Residues: 1-297; Coverage: 100%)
Gene names: LPI14W, RPL1, RPL1A, RPL5, YPL131W
Sequence domains:
60S ribosomal protein L6-A Chains: BM, YM, ZM
Molecule details ›
Chains: BM, YM, ZM
Length: 176 amino acids
Theoretical weight: 20 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q02326 (Residues: 1-176; Coverage: 100%)
Gene names: RPL17A, RPL6A, YL16A, YML073C
Sequence domains: Ribosomal protein L6e
60S ribosomal protein L7-A Chains: BO, YO, ZO
Molecule details ›
Chains: BO, YO, ZO
Length: 244 amino acids
Theoretical weight: 27.69 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P05737 (Residues: 1-244; Coverage: 100%)
Gene names: RPL6A, RPL7A, RPL8A, YGL076C, YL8A
Sequence domains:
60S ribosomal protein L8-A Chains: AA, XA, zA
Molecule details ›
Chains: AA, XA, zA
Length: 256 amino acids
Theoretical weight: 28.18 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P17076 (Residues: 1-256; Coverage: 100%)
Gene names: MAK7, RPL4A, RPL8A, YHL033C
Sequence domains: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
60S ribosomal protein L9-A Chains: AD, XD, zD
Molecule details ›
Chains: AD, XD, zD
Length: 190 amino acids
Theoretical weight: 21.49 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P05738 (Residues: 1-190; Coverage: 100%)
Gene names: RPL8A, RPL9, RPL9A, YGL147C
Sequence domains: Ribosomal protein L6
60S ribosomal protein L10 Chains: BD, YD, ZD
Molecule details ›
Chains: BD, YD, ZD
Length: 221 amino acids
Theoretical weight: 25.41 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P41805 (Residues: 1-221; Coverage: 100%)
Gene names: GRC5, QSR1, RPL10, YLR075W
Sequence domains: Ribosomal protein L16p/L10e
60S ribosomal protein L11-A Chains: AG, XG, zG
Molecule details ›
Chains: AG, XG, zG
Length: 174 amino acids
Theoretical weight: 19.76 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0C0W9 (Residues: 1-174; Coverage: 100%)
Gene names: P8283.14, RP39A, RPL11A, RPL16A, YPR102C
Sequence domains:
60S ribosomal protein L13-A Chains: AJ, XJ, zJ
Molecule details ›
Chains: AJ, XJ, zJ
Length: 199 amino acids
Theoretical weight: 22.6 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q12690 (Residues: 1-199; Coverage: 100%)
Gene names: RPL13A, YDL082W
Sequence domains: Ribosomal protein L13e
60S ribosomal protein L14-A Chains: AM, XM, zM
Molecule details ›
Chains: AM, XM, zM
Length: 138 amino acids
Theoretical weight: 15.2 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P36105 (Residues: 1-138; Coverage: 100%)
Gene names: RPL14A, YKL006W, YKL153
Sequence domains: Ribosomal protein L14
60S ribosomal protein L15-A Chains: AQ, XQ, zQ
Molecule details ›
Chains: AQ, XQ, zQ
Length: 204 amino acids
Theoretical weight: 24.48 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P05748 (Residues: 1-204; Coverage: 100%)
Gene names: RPL10A, RPL13A, RPL15A, YL10A, YLR029C
Sequence domains: Ribosomal L15
60S ribosomal protein L16-A Chains: AU, XU, zU
Molecule details ›
Chains: AU, XU, zU
Length: 199 amino acids
Theoretical weight: 22.25 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P26784 (Residues: 1-199; Coverage: 100%)
Gene names: RPL13, RPL16A, RPL21A, YIL133C
Sequence domains: Ribosomal protein L13
40S ribosomal protein S0-A Chains: P, Pb, Pc
Molecule details ›
Chains: P, Pb, Pc
Length: 252 amino acids
Theoretical weight: 28.05 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P32905 (Residues: 1-252; Coverage: 100%)
Gene names: NAB1, NAB1A, RPS0A, YGR214W, YST1
Sequence domains: Ribosomal protein S2
40S ribosomal protein S1-A Chains: Q, Qb, Qc
Molecule details ›
Chains: Q, Qb, Qc
Length: 255 amino acids
Theoretical weight: 28.8 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P33442 (Residues: 1-255; Coverage: 100%)
Gene names: L9753.9, PLC1, RPS10A, RPS1A, YLR441C
Sequence domains: Ribosomal S3Ae family
40S ribosomal protein S2 Chains: R, Rb, Rc
Molecule details ›
Chains: R, Rb, Rc
Length: 254 amino acids
Theoretical weight: 27.49 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P25443 (Residues: 1-254; Coverage: 100%)
Gene names: G2893, RPS2, RPS4, SUP38, SUP44, YGL123W
Sequence domains:
40S ribosomal protein S3 Chains: A, Ab, Ac
Molecule details ›
Chains: A, Ab, Ac
Length: 240 amino acids
Theoretical weight: 26.54 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P05750 (Residues: 1-240; Coverage: 100%)
Gene names: N1653, RPS3, SUF14, YNL178W
Sequence domains:
40S ribosomal protein S4-A Chains: S, Sb, Sc
Molecule details ›
Chains: S, Sb, Sc
Length: 261 amino acids
Theoretical weight: 29.47 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0CX35 (Residues: 1-261; Coverage: 100%)
Gene names: J2186, RPS4A, RPS7B, YJR145C
Sequence domains:
Ribosomal_S7 domain-containing protein Chains: B, Bb, Bc
Molecule details ›
Chains: B, Bb, Bc
Length: 225 amino acids
Theoretical weight: 25.07 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: A0A1L4AA68 (Residues: 1-225; Coverage: 100%)
Gene names: PACBIOSEQ_LOCUS3157, PACBIOSEQ_LOCUS3331, PACBIOSEQ_LOCUS3372, PACBIOSEQ_LOCUS3390, PACBIOSEQ_LOCUS3391, PACBIOSEQ_LOCUS3422, PACBIOSEQ_LOCUS3460, PACBIOSEQ_LOCUS3669, PACBIOSEQ_LOCUS3731, RPS5, SCNYR20_0009028700, SCP684_0009028200
Sequence domains: Ribosomal protein S7p/S5e
40S ribosomal protein S6-A Chains: T, Tb, Tc
Molecule details ›
Chains: T, Tb, Tc
Length: 218 amino acids
Theoretical weight: 24.97 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0CX37 (Residues: 1-218; Coverage: 92%)
Gene names: LPG18C, RPS101, RPS10B, RPS6A, YPL090C
Sequence domains: Ribosomal protein S6e
40S ribosomal protein S7-A Chains: U, Ub, Uc
Molecule details ›
Chains: U, Ub, Uc
Length: 190 amino acids
Theoretical weight: 21.66 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P26786 (Residues: 1-190; Coverage: 100%)
Gene names: RPS30, RPS7A, YOR096W, YOR3177W
Sequence domains: Ribosomal protein S7e
40S ribosomal protein S8-A Chains: V, Vb, Vc
Molecule details ›
Chains: V, Vb, Vc
Length: 200 amino acids
Theoretical weight: 22.54 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0CX39 (Residues: 1-200; Coverage: 100%)
Gene names: RPS14A, RPS8A, YBL06.05, YBL0613, YBL072C
Sequence domains: Ribosomal protein S8e
40S ribosomal protein S9-A Chains: W, Wb, Wc
Molecule details ›
Chains: W, Wb, Wc
Length: 197 amino acids
Theoretical weight: 22.49 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: O13516 (Residues: 1-197; Coverage: 100%)
Gene names: RPS13A, RPS9A, YPL081W, YS11A
Sequence domains: S4 domain
40S ribosomal protein S10-A Chains: C, Cb, Cc
Molecule details ›
Chains: C, Cb, Cc
Length: 92 amino acids
Theoretical weight: 11.04 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q08745 (Residues: 1-92; Coverage: 88%)
Gene names: RPS10A, YOR293W
40S ribosomal protein S11-A Chains: X, Xb, Xc
Molecule details ›
Chains: X, Xb, Xc
Length: 156 amino acids
Theoretical weight: 17.79 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0CX47 (Residues: 1-156; Coverage: 100%)
Gene names: RPS11A, RPS18A, YD9813.03, YDR025W
Sequence domains:
40S ribosomal protein S12 Chains: D, Db, Dc
Molecule details ›
Chains: D, Db, Dc
Length: 143 amino acids
Theoretical weight: 15.49 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P48589 (Residues: 1-143; Coverage: 100%)
Gene names: RPS12, YOR369C
Sequence domains: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
40S ribosomal protein S13 Chains: Y, Yb, Yc
Molecule details ›
Chains: Y, Yb, Yc
Length: 151 amino acids
Theoretical weight: 17.06 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P05756 (Residues: 1-151; Coverage: 100%)
Gene names: D4252, RPS13, RPS13C, YD9609.18, YDR064W
Sequence domains:
40S ribosomal protein S14-A Chains: Z, Zb, Zc
Molecule details ›
Chains: Z, Zb, Zc
Length: 137 amino acids
Theoretical weight: 14.56 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P06367 (Residues: 1-137; Coverage: 100%)
Gene names: CRY1, RPL59, RPS14A, YCR031C, YCR31C
Sequence domains: Ribosomal protein S11
40S ribosomal protein S15 Chains: E, Eb, Ec
Molecule details ›
Chains: E, Eb, Ec
Length: 142 amino acids
Theoretical weight: 16.03 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q01855 (Residues: 1-142; Coverage: 100%)
Gene names: RPS15, RPS21, YOL040C
Sequence domains: Ribosomal protein S19
40S ribosomal protein S16-A Chains: F, Fb, Fc
Molecule details ›
Chains: F, Fb, Fc
Length: 143 amino acids
Theoretical weight: 15.88 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0CX51 (Residues: 1-143; Coverage: 100%)
Gene names: RP61R, RPS16A, YM9375.12, YMR143W
Sequence domains: Ribosomal protein S9/S16
40S ribosomal protein S17-B Chains: G, Gb, Gc
Molecule details ›
Chains: G, Gb, Gc
Length: 136 amino acids
Theoretical weight: 15.84 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P14127 (Residues: 1-136; Coverage: 100%)
Gene names: RP51B, RPS17B, YDR447C
Sequence domains: Ribosomal S17
40S ribosomal protein S18-A Chains: H, Hb, Hc
Molecule details ›
Chains: H, Hb, Hc
Length: 146 amino acids
Theoretical weight: 17.07 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0CX55 (Residues: 1-146; Coverage: 100%)
Gene names: D9461.35, RPS18A, YDR450W
Sequence domains: Ribosomal protein S13/S18
40S ribosomal protein S19-A Chains: I, Ib, Ic
Molecule details ›
Chains: I, Ib, Ic
Length: 144 amino acids
Theoretical weight: 15.94 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P07280 (Residues: 1-144; Coverage: 100%)
Gene names: RP55A, RPS16AA, RPS19A, YOL121C
Sequence domains: Ribosomal protein S19e
40S ribosomal protein S20 Chains: J, Jb, Jc
Molecule details ›
Chains: J, Jb, Jc
Length: 121 amino acids
Theoretical weight: 13.93 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P38701 (Residues: 1-121; Coverage: 100%)
Gene names: RPS20, URP2, YHL015W
Sequence domains: Ribosomal protein S10p/S20e
40S ribosomal protein S21-A Chains: a, ab, ac
Molecule details ›
Chains: a, ab, ac
Length: 87 amino acids
Theoretical weight: 9.76 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0C0V8 (Residues: 1-87; Coverage: 100%)
Gene names: RPS21A, RPS25, RPS25A, RPS26A, YKR057W
Sequence domains: Ribosomal protein S21e
40S ribosomal protein S22-A Chains: b, bb, bc
Molecule details ›
Chains: b, bb, bc
Length: 130 amino acids
Theoretical weight: 14.65 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0C0W1 (Residues: 1-130; Coverage: 100%)
Gene names: J0355, RPS22A, RPS24, RPS24A, YJL190C
Sequence domains: Ribosomal protein S8
40S ribosomal protein S23-A Chains: c, cb, cc
Molecule details ›
Chains: c, cb, cc
Length: 145 amino acids
Theoretical weight: 16.07 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0CX29 (Residues: 1-145; Coverage: 100%)
Gene names: G6178, RPS23A, RPS28A, YGR118W
Sequence domains: Ribosomal protein S12/S23
40S ribosomal protein S24-A Chains: d, db, dc
Molecule details ›
Chains: d, db, dc
Length: 135 amino acids
Theoretical weight: 15.36 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0CX31 (Residues: 1-135; Coverage: 100%)
Gene names: RPS24A, RPS24EA, YER074W
Sequence domains: Ribosomal protein S24e
40S ribosomal protein S25-A Chains: K, Kb, Kc
Molecule details ›
Chains: K, Kb, Kc
Length: 108 amino acids
Theoretical weight: 12.07 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q3E792 (Residues: 1-108; Coverage: 100%)
Gene names: RPS25A, RPS31A, YGR027C
Sequence domains: S25 ribosomal protein
40S ribosomal protein S26-A Chains: e, eb, ec
Molecule details ›
Chains: e, eb, ec
Length: 119 amino acids
Theoretical weight: 13.54 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P39938 (Residues: 1-119; Coverage: 100%)
Gene names: G1355, RPS26, RPS26A, YGL189C
Sequence domains: Ribosomal protein S26e
40S ribosomal protein S27-A Chains: f, fb, fc
Molecule details ›
Chains: f, fb, fc
Length: 82 amino acids
Theoretical weight: 8.89 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P35997 (Residues: 1-82; Coverage: 100%)
Gene names: RPS27A, YKL156W
Sequence domains: Ribosomal protein S27
40S ribosomal protein S28-B Chains: L, Lb, Lc
Molecule details ›
Chains: L, Lb, Lc
Length: 67 amino acids
Theoretical weight: 7.58 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0C0X0 (Residues: 1-67; Coverage: 100%)
Gene names: L8479.5, RPS28B, RPS33B, YLR264W
Sequence domains: Ribosomal protein S28e
40S ribosomal protein S29-A Chains: M, Mb, Mc
Molecule details ›
Chains: M, Mb, Mc
Length: 56 amino acids
Theoretical weight: 6.68 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P41057 (Residues: 1-56; Coverage: 100%)
Gene names: L8084.11, RPS29A, RPS36A, YLR388W, YS29A
Sequence domains: Ribosomal protein S14p/S29e
40S ribosomal protein S30-A Chains: g, gb, gc
Molecule details ›
Chains: g, gb, gc
Length: 63 amino acids
Theoretical weight: 7.14 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0CX33 (Residues: 1-63; Coverage: 100%)
Gene names: L8003.23, RPS30A, YLR287BC, YLR287C-A
Sequence domains: Ribosomal protein S30
Ubiquitin-40S ribosomal protein S31 Chains: N, Nb, Nc
Molecule details ›
Chains: N, Nb, Nc
Length: 152 amino acids
Theoretical weight: 17.25 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P05759 (Residues: 1-152; Coverage: 100%)
Gene names: L9470.14, RPS31, RPS37, UBI3, YLR167W
Sequence domains:
Guanine nucleotide-binding protein subunit beta-like protein Chains: O, Ob, Oc
Molecule details ›
Chains: O, Ob, Oc
Length: 319 amino acids
Theoretical weight: 34.84 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P38011 (Residues: 1-319; Coverage: 100%)
Gene names: ASC1, CPC2, YM9718.15C, YMR116C
Sequence domains: WD domain, G-beta repeat
60S ribosomal protein L17-A Chains: AX, XX, zX
Molecule details ›
Chains: AX, XX, zX
Length: 184 amino acids
Theoretical weight: 20.59 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P05740 (Residues: 1-184; Coverage: 100%)
Gene names: RPL17, RPL17A, RPL20A, YKL180W
Sequence domains: Ribosomal protein L22p/L17e
60S ribosomal protein L18-A Chains: BB, YB, ZB
Molecule details ›
Chains: BB, YB, ZB
Length: 186 amino acids
Theoretical weight: 20.61 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0CX49 (Residues: 1-186; Coverage: 100%)
Gene names: RP28A, RPL18A, YOL120C
Sequence domains: Ribosomal protein 60S L18 and 50S L18e
60S ribosomal protein L19-A Chains: BF, YF, ZF
Molecule details ›
Chains: BF, YF, ZF
Length: 189 amino acids
Theoretical weight: 21.76 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0CX82 (Residues: 1-189; Coverage: 100%)
Gene names: RPL19A, RPL23A, YBR084BC, YBR084C-A, YL14A
Sequence domains: Ribosomal protein L19e
60S ribosomal protein L20-A Chains: BH, YH, ZH
Molecule details ›
Chains: BH, YH, ZH
Length: 172 amino acids
Theoretical weight: 20.48 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0CX23 (Residues: 1-172; Coverage: 100%)
Gene names: RPL18A, RPL18A2, RPL20A, YM9408.04C, YMR242C
Sequence domains: Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A
60S ribosomal protein L21-A Chains: BJ, YJ, ZJ
Molecule details ›
Chains: BJ, YJ, ZJ
Length: 160 amino acids
Theoretical weight: 18.28 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q02753 (Residues: 1-160; Coverage: 100%)
Gene names: RPL21A, URP1, YBR1401, YBR191W
Sequence domains: Ribosomal protein L21e
60S ribosomal protein L22-A Chains: BL, YL, ZL
Molecule details ›
Chains: BL, YL, ZL
Length: 121 amino acids
Theoretical weight: 13.71 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P05749 (Residues: 1-121; Coverage: 100%)
Gene names: L2168, RPL22A, YLR061W
Sequence domains: Ribosomal L22e protein family
60S ribosomal protein L23-A Chains: AB, XB, zB
Molecule details ›
Chains: AB, XB, zB
Length: 137 amino acids
Theoretical weight: 14.49 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0CX41 (Residues: 1-137; Coverage: 100%)
Gene names: RPL17A, RPL17AA, RPL23A, YBL0713, YBL087C
Sequence domains: Ribosomal protein L14p/L23e
60S ribosomal protein L24-A Chains: AE, XE, zE
Molecule details ›
Chains: AE, XE, zE
Length: 135 amino acids
Theoretical weight: 15.51 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P04449 (Residues: 1-135; Coverage: 87%)
Gene names: RP29, RPL24A, RPL30A, YGL031C
Sequence domains: Ribosomal protein L24e
60S ribosomal protein L25 Chains: AH, XH, zH
Molecule details ›
Chains: AH, XH, zH
Length: 142 amino acids
Theoretical weight: 15.79 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P04456 (Residues: 1-142; Coverage: 100%)
Gene names: RPL25, YOL127W
Sequence domains:
60S ribosomal protein L26-A Chains: AK, XK, zK
Molecule details ›
Chains: AK, XK, zK
Length: 127 amino acids
Theoretical weight: 14.27 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P05743 (Residues: 1-127; Coverage: 100%)
Gene names: L8300.4, RPL26, RPL26A, RPL33A, YLR344W
Sequence domains:
60S ribosomal protein L27-A Chains: AN, XN, zN
Molecule details ›
Chains: AN, XN, zN
Length: 136 amino acids
Theoretical weight: 15.57 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0C2H6 (Residues: 1-136; Coverage: 100%)
Gene names: RPL27, RPL27A, YHR010W
Sequence domains: Ribosomal L27e protein family
60S ribosomal protein L28 Chains: AR, XR, zR
Molecule details ›
Chains: AR, XR, zR
Length: 149 amino acids
Theoretical weight: 16.76 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P02406 (Residues: 1-149; Coverage: 100%)
Gene names: CYH2, RPL28, YGL103W
Sequence domains: Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
60S ribosomal protein L29 Chains: AV, XV, zV
Molecule details ›
Chains: AV, XV, zV
Length: 59 amino acids
Theoretical weight: 6.69 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P05747 (Residues: 1-59; Coverage: 100%)
Gene names: RPL29, YFR032BW, YFR032C-A, YL43
Sequence domains: Ribosomal L29e protein family
60S ribosomal protein L30 Chains: AY, XY, zY
Molecule details ›
Chains: AY, XY, zY
Length: 105 amino acids
Theoretical weight: 11.43 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P14120 (Residues: 1-105; Coverage: 100%)
Gene names: RPL30, RPL32, YGL030W
Sequence domains: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
60S ribosomal protein L31-A Chains: BC, YC, ZC
Molecule details ›
Chains: BC, YC, ZC
Length: 113 amino acids
Theoretical weight: 12.98 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0C2H8 (Residues: 1-113; Coverage: 100%)
Gene names: D2478, RPL31A, RPL34, RPL34A, YDL075W
Sequence domains: Ribosomal protein L31e
60S ribosomal protein L32 Chains: BG, YG, ZG
Molecule details ›
Chains: BG, YG, ZG
Length: 130 amino acids
Theoretical weight: 14.81 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P38061 (Residues: 1-130; Coverage: 100%)
Gene names: RPL32, YBL0838, YBL092W
Sequence domains: Ribosomal protein L32
60S ribosomal protein L33-A Chains: BK, YK, ZK
Molecule details ›
Chains: BK, YK, ZK
Length: 107 amino acids
Theoretical weight: 12.18 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P05744 (Residues: 1-107; Coverage: 100%)
Gene names: LPI4W, P2625, RPL33A, RPL37A, YPL143W
Sequence domains: Ribosomal protein L35Ae
60S ribosomal protein L34-A Chains: BN, YN, ZN
Molecule details ›
Chains: BN, YN, ZN
Length: 121 amino acids
Theoretical weight: 13.67 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P87262 (Residues: 1-121; Coverage: 100%)
Gene names: RPL34A, YER056BC, YER056C-A
Sequence domains: Ribosomal protein L34e
60S ribosomal protein L35-A Chains: BP, YP, ZP
Molecule details ›
Chains: BP, YP, ZP
Length: 120 amino acids
Theoretical weight: 13.94 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0CX84 (Residues: 1-120; Coverage: 100%)
Gene names: D1249, RPL35A, SOS1, YDL191W
Sequence domains: Ribosomal L29 protein
60S ribosomal protein L36-A Chains: AC, XC, zC
Molecule details ›
Chains: AC, XC, zC
Length: 100 amino acids
Theoretical weight: 11.15 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P05745 (Residues: 1-100; Coverage: 100%)
Gene names: RPL36A, RPL39A, YM9646.06, YMR194W
Sequence domains: Ribosomal protein L36e
60S ribosomal protein L37-A Chains: AF, XF, zF
Molecule details ›
Chains: AF, XF, zF
Length: 88 amino acids
Theoretical weight: 9.88 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P49166 (Residues: 1-88; Coverage: 100%)
Gene names: L9470.6, RPL35A, RPL37A, YLR185W
Sequence domains: Ribosomal protein L37e
60S ribosomal protein L38 Chains: AI, XI, zI
Molecule details ›
Chains: AI, XI, zI
Length: 78 amino acids
Theoretical weight: 8.85 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P49167 (Residues: 1-78; Coverage: 100%)
Gene names: L8543.2, RPL38, YLR325C
Sequence domains: Ribosomal L38e protein family
60S ribosomal protein L39 Chains: AL, XL, zL
Molecule details ›
Chains: AL, XL, zL
Length: 51 amino acids
Theoretical weight: 6.36 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P04650 (Residues: 1-51; Coverage: 100%)
Gene names: J0360, RPL39, RPL46, SPB2, YJL189W
Sequence domains: Ribosomal L39 protein
Ubiquitin-60S ribosomal protein L40 Chains: AO, XO, zO
Molecule details ›
Chains: AO, XO, zO
Length: 128 amino acids
Theoretical weight: 14.58 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0CH08 (Residues: 1-128; Coverage: 100%)
Gene names: RPL40A, UBI1, YIL148W
Sequence domains:
60S ribosomal protein L41-B Chains: AS, XS, zS
Molecule details ›
Chains: AS, XS, zS
Length: 25 amino acids
Theoretical weight: 3.35 KDa
Source organism: Saccharomyces cerevisiae
60S ribosomal protein L42-A Chains: AP, XP, zP
Molecule details ›
Chains: AP, XP, zP
Length: 106 amino acids
Theoretical weight: 12.25 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0CX27 (Residues: 1-106; Coverage: 100%)
Gene names: N1722, RPL41A, RPL42A, SCL41A, YNL162W
Sequence domains: Ribosomal protein L44
60S ribosomal protein L43-A Chains: AT, XT, zT
Molecule details ›
Chains: AT, XT, zT
Length: 92 amino acids
Theoretical weight: 10.11 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0CX25 (Residues: 1-92; Coverage: 100%)
Gene names: RPL43A, YP9499.02, YPR043W
Sequence domains: Ribosomal L37ae protein family
60S acidic ribosomal protein P0 Chains: BU, YU, ZU
Molecule details ›
Chains: BU, YU, ZU
Length: 312 amino acids
Theoretical weight: 33.75 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P05317 (Residues: 1-312; Coverage: 100%)
Gene names: L10E, L8300.8, RPA0, RPL10E, RPLA0, RPP0, YLR340W
Sequence domains:
25S ribosomal RNA Chains: BQ, YQ, ZQ
Molecule details ›
Chains: BQ, YQ, ZQ
Length: 3396 nucleotides
Theoretical weight: 1097.49 KDa
Sequence domains: Eukaryotic large subunit ribosomal RNA
5S ribosomal RNA Chains: BR, YR, ZR
Molecule details ›
Chains: BR, YR, ZR
Length: 121 nucleotides
Theoretical weight: 38.95 KDa
Sequence domains: 5S ribosomal RNA
5.8S ribosomal RNA Chains: BS, YS, ZS
Molecule details ›
Chains: BS, YS, ZS
Length: 157 nucleotides
Theoretical weight: 50.38 KDa
Sequence domains: 5.8S ribosomal RNA
18S Ribosomal RNA Chains: 2, 2b, 2c
Molecule details ›
Chains: 2, 2b, 2c
Length: 1800 nucleotides
Theoretical weight: 579.76 KDa
Sequence domains: Eukaryotic small subunit ribosomal RNA
tRNA (P/P) Chain: n
Molecule details ›
Chain: n
Length: 76 nucleotides
Theoretical weight: 24.47 KDa
Sequence domains: tRNA
tRNA (A/P) Chains: nb, nc
Molecule details ›
Chains: nb, nc
Length: 76 nucleotides
Theoretical weight: 24.5 KDa
Sequence domains: tRNA
tRNA (P/E) Chains: mb, mc
Molecule details ›
Chains: mb, mc
Length: 77 nucleotides
Theoretical weight: 24.8 KDa
Sequence domains: tRNA

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.3Å
Relevant EMDB volumes: EMD-10315