6rya

X-ray diffraction
2.21Å resolution

Structure of Dup1 mutant H67A:Ubiquitin complex

Released:

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
PDBe Complex ID:
PDB-CPX-104779 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
SidE PDE domain-containing protein Chains: A, C, E
Molecule details ›
Chains: A, C, E
Length: 343 amino acids
Theoretical weight: 39.12 KDa
Source organism: Legionella pneumophila subsp. pneumophila
Expression system: Escherichia coli
UniProt:
  • Canonical: A0A3A6VNK6 (Residues: 4-345; Coverage: 92%)
Gene name: D1H98_09620
Sequence domains: SidE phosphodiesterase (PDE) domain
Ubiquitin Chains: B, D, F
Molecule details ›
Chains: B, D, F
Length: 76 amino acids
Theoretical weight: 8.58 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: P0CG48 (Residues: 609-684; Coverage: 11%)
Gene name: UBC
Sequence domains: Ubiquitin family

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SLS BEAMLINE X06SA
Spacegroup: C2
Unit cell:
a: 116.328Å b: 67.136Å c: 182.753Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.213 0.209 0.289
Expression system: Escherichia coli