› 6rsj

X-ray diffraction
2.27Å resolution

Cytochrome c co-crystallized with 20 eq. sulfonato-calix[8]arene and soaked with 25 eq. spermine - structure I

Released:
DOI: 10.2210/pdb6rsj/pdb
PDB entry 6rsj coloured by chain, front view.
PDB entry 6rsj coloured by chain, side view.
PDB entry 6rsj coloured by chain, top view.
Source organism: Saccharomyces cerevisiae S288C
Primary publication:
Tuning Protein Frameworks via Auxiliary Supramolecular Interactions.
Engilberge S, Rennie ML, Dumont E, Crowley PB
ACS Nano 13 10343-10350 (2019)
PMID: 31490058

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-132226 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Cytochrome c isoform 1 Chain: A
Molecule details ›
Chain: A
Length: 108 amino acids
Theoretical weight: 12.04 KDa
Source organism: Saccharomyces cerevisiae S288C
Expression system: Escherichia coli
UniProt:
  • Canonical: P00044 (Residues: 3-109; Coverage: 98%)
Gene names: CYC1, J1653, YJR048W
Sequence domains: Cytochrome c

Ligands and Environments

5 bound ligands:
Ligand HEC 1 x HEC
Ligand EVB 3 x EVB
Ligand SPM 2 x SPM
Ligand SO4 2 x SO4
Ligand GOL 5 x GOL
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SOLEIL BEAMLINE PROXIMA 2
Spacegroup: P43212
Unit cell:
a: 101.452Å b: 101.452Å c: 85.612Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.194 0.193 0.212
Expression system: Escherichia coli

Quick links

Citations

1 review citation

Protein Assembly by Design.
Zhu et al. (2021)
11 other articles

1 mention without citation

Atomic Details of Carbon-Based Nanomolecules Interacting with Proteins.
Di Costanzo et al. (2020)