6qtp

X-ray diffraction
2.37Å resolution

2.37A structure of gepotidacin with S.aureus DNA gyrase and uncleaved DNA

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero hexamer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-120504 (preferred)
Entry contents:
2 distinct polypeptide molecules
1 distinct DNA molecule
Macromolecules (3 distinct):
DNA gyrase subunit B Chains: B, D
Molecule details ›
Chains: B, D
Length: 202 amino acids
Theoretical weight: 22.61 KDa
Source organism: Staphylococcus aureus
Expression system: Escherichia coli
UniProt:
  • Canonical: P66937 (Residues: 409-543, 580-644; Coverage: 31%)
Gene names: SA0005, gyrB
Sequence domains:
DNA gyrase subunit A Chains: A, C
Molecule details ›
Chains: A, C
Length: 490 amino acids
Theoretical weight: 55.54 KDa
Source organism: Staphylococcus aureus
Expression system: Escherichia coli
UniProt:
  • Canonical: Q99XG5 (Residues: 2-491; Coverage: 55%)
Gene names: SA0006, gyrA
Sequence domains: DNA gyrase/topoisomerase IV, subunit A
DNA (5'-D(*GP*AP*GP*CP*GP*TP*AP*CP*AP*GP*CP*TP*GP*TP*AP*CP*GP*CP*TP*T)-3') Chains: E, F
Molecule details ›
Chains: E, F
Length: 20 nucleotides
Theoretical weight: 6.15 KDa

Ligands and Environments

No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE ID23-1
Spacegroup: P21
Unit cell:
a: 86.341Å b: 123.653Å c: 94.099Å
α: 90° β: 117.1° γ: 90°
R-values:
R R work R free
0.185 0.183 0.224
Expression system: Escherichia coli