› 6qt5

X-ray diffraction
1.8Å resolution

Radiation damage study on a 16mer DNA segment, structure at 63.7 MGy dose

Released:
DOI: 10.2210/pdb6qt5/pdb
PDB entry 6qt5 coloured by chain, front view.
PDB entry 6qt5 coloured by chain, side view.
PDB entry 6qt5 coloured by chain, top view.
Source organism: synthetic construct
Primary publication:
Radiation-damage investigation of a DNA 16-mer.
Bugris V, Harmat V, Ferenc G, Brockhauser S, Carmichael I, Garman EF
J Synchrotron Radiat 26 998-1009 (2019)
PMID: 31274421

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-120501 (preferred)
Entry contents:
1 distinct DNA molecule
Macromolecule:
DNA (5'-D(*GP*CP*TP*GP*GP*AP*AP*AP*TP*TP*TP*CP*CP*AP*GP*C)-3') Chain: A
Molecule details ›
Chain: A
Length: 16 nucleotides
Theoretical weight: 4.9 KDa
Source organism: synthetic construct
Expression system: Not provided

Ligands and Environments

1 bound ligand:
Ligand CA 6 x CA
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I24
Spacegroup: R32
Unit cell:
a: 36.931Å b: 36.931Å c: 162.485Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.252 0.248 0.345
Expression system: Not provided

Quick links

Citations

1 review citation

Could Oxidative Stress Play a Role in the Development and Clinical Management of Differentiated Thyroid Cancer?
Kościuszko et al. (2023)
3 other articles