6q7l

Electron Microscopy
7.6Å resolution

Spiral structure of E. coli RavA in the RavA-LdcI cage-like complex

Released:

Function and Biology Details

Reaction catalysed:
L-lysine = cadaverine + CO(2)
Biochemical function:
Biological process:
Cellular component:

Structure analysis Details

Assembly composition:
hetero 26-mer (preferred)
Entry contents:
3 distinct polypeptide molecules
Macromolecules (3 distinct):
Inducible lysine decarboxylase Chains: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T
Molecule details ›
Chains: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T
Length: 715 amino acids
Theoretical weight: 81.36 KDa
Source organism: Escherichia coli
Expression system: Escherichia coli
UniProt:
  • Canonical: P0A9H4 (Residues: 1-715; Coverage: 100%)
Gene names: ECs5113, Z5734, cadA, ldcI
Sequence domains:
ATPase RavA Chain: U
Molecule details ›
Chain: U
Length: 498 amino acids
Theoretical weight: 56.45 KDa
Source organism: Escherichia coli
Expression system: Escherichia coli
UniProt:
  • Canonical: P31473 (Residues: 1-498; Coverage: 100%)
Gene names: JW3725, b3746, ravA, yieN
Sequence domains:
ATPase RavA Chains: V, W, X, Y, Z
Molecule details ›
Chains: V, W, X, Y, Z
Length: 497 amino acids
Theoretical weight: 56.35 KDa
Source organism: Escherichia coli
Expression system: Escherichia coli
UniProt:
  • Canonical: J7QAN2 (Residues: 9-505; Coverage: 98%)
Gene names: BN17_37001, ravA, yieN
Sequence domains:

Ligands and Environments


Cofactor: Ligand PLP 20 x PLP
1 bound ligand:

No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 7.6Å
Relevant EMDB volumes: EMD-4469
Expression system: Escherichia coli