Function and Biology

Crystal structure of SIVrcm Vif-CBFbeta-ELOB-ELOC complex

Source organisms:
Biochemical function: protein binding
Biological process: target-directed miRNA degradation
Cellular component: nucleoplasm

Sequence families

Pfam Protein families (Pfam)
PF03931
Domain description: Skp1 family, tetramerisation domain
Occurring in:
  1. Elongin-C
The deposited structure of PDB entry 6p59 contains 2 copies of Pfam domain PF03931 (Skp1 family, tetramerisation domain) in Elongin-C. Showing 1 copy in chain G [auth E].

PF00240
Domain description: Ubiquitin family
Occurring in:
  1. Elongin-B
The deposited structure of PDB entry 6p59 contains 2 copies of Pfam domain PF00240 (Ubiquitin family) in Elongin-B. Showing 1 copy in chain F [auth D].

PF00559
Domain description: Retroviral Vif (Viral infectivity) protein
Occurring in:
  1. Virion infectivity factor
The deposited structure of PDB entry 6p59 contains 2 copies of Pfam domain PF00559 (Retroviral Vif (Viral infectivity) protein) in Virion infectivity factor. Showing 1 copy in chain H [auth B].

PF02312
Domain description: Core binding factor beta subunit
Occurring in:
  1. Core-binding factor subunit beta
The deposited structure of PDB entry 6p59 contains 2 copies of Pfam domain PF02312 (Core binding factor beta subunit) in Core-binding factor subunit beta. Showing 1 copy in chain E [auth A].

InterPro InterPro annotations
IPR000475
Domain description: Retroviral Vif (Viral infectivity) protein
Occurring in:
  1. Virion infectivity factor
IPR000626
Domain description: Ubiquitin-like domain
Occurring in:
  1. Elongin-B
IPR011333
Domain description: SKP1/BTB/POZ domain superfamily
Occurring in:
  1. Elongin-C
IPR036552
Domain description: Core-binding factor, beta subunit superfamily
Occurring in:
  1. Core-binding factor subunit beta
IPR003417
Domain description: Core-binding factor, beta subunit
Occurring in:
  1. Core-binding factor subunit beta
IPR016073
Domain description: SKP1 component, POZ domain
Occurring in:
  1. Elongin-C
IPR001232
Domain description: S-phase kinase-associated protein 1-like
Occurring in:
  1. Elongin-C
IPR039948
Domain description: Elongin-C
Occurring in:
  1. Elongin-C
IPR039049
Domain description: Elongin B
Occurring in:
  1. Elongin-B
IPR029071
Domain description: Ubiquitin-like domain superfamily
Occurring in:
  1. Elongin-B