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RHODOCETIN IN COMPLEX WITH THE INTEGRIN ALPHA2-A DOMAIN AND CADMIUM

Source organisms:
Biochemical function: toxin activity
Biological process: antimicrobial humoral immune response mediated by antimicrobial peptide
Cellular component: collagen-containing extracellular matrix

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GO terms

Sequence families

Pfam Protein families (Pfam)
PF00059
Domain description: Lectin C-type domain
Occurring in:
  1. Snaclec rhodocetin subunit gamma
  2. Snaclec rhodocetin subunit delta
The deposited structure of PDB entry 6nda contains 6 copies of Pfam domain PF00059 (Lectin C-type domain) in Snaclec rhodocetin subunit gamma. Showing 1 copy in chain A.
The deposited structure of PDB entry 6nda contains 6 copies of Pfam domain PF00059 (Lectin C-type domain) in Snaclec rhodocetin subunit delta. Showing 1 copy in chain N.

PF00092
Domain description: von Willebrand factor type A domain
Occurring in:
  1. Integrin alpha-2
The deposited structure of PDB entry 6nda contains 6 copies of Pfam domain PF00092 (von Willebrand factor type A domain) in Integrin alpha-2. Showing 1 copy in chain C.

InterPro InterPro annotations
IPR001304
Domain description: C-type lectin-like
Occurring in:
  1. Snaclec rhodocetin subunit gamma
  2. Snaclec rhodocetin subunit delta
IPR002035
Domain description: von Willebrand factor, type A
Occurring in:
  1. Integrin alpha-2
IPR036465
Domain description: von Willebrand factor A-like domain superfamily
Occurring in:
  1. Integrin alpha-2
IPR016187
Domain description: C-type lectin fold
Occurring in:
  1. Snaclec rhodocetin subunit gamma
  2. Snaclec rhodocetin subunit delta
IPR016186
Domain description: C-type lectin-like/link domain superfamily
Occurring in:
  1. Snaclec rhodocetin subunit gamma
  2. Snaclec rhodocetin subunit delta
IPR018378
Domain description: C-type lectin, conserved site
Occurring in:
  1. Snaclec rhodocetin subunit delta

Structure domains

CATH CATH domains
3.10.100.10
Class: Alpha Beta
Architecture: Roll
Topology: Mannose-Binding Protein A; Chain A
Homology: Mannose-Binding Protein A, subunit A
Occurring in:
  1. Snaclec rhodocetin subunit gamma
  2. Snaclec rhodocetin subunit delta
The deposited structure of PDB entry 6nda contains 6 copies of CATH domain 3.10.100.10 (Mannose-Binding Protein A; Chain A) in Snaclec rhodocetin subunit gamma. Showing 1 copy in chain A.
The deposited structure of PDB entry 6nda contains 6 copies of CATH domain 3.10.100.10 (Mannose-Binding Protein A; Chain A) in Snaclec rhodocetin subunit delta. Showing 1 copy in chain B.
3.40.50.410
Class: Alpha Beta
Architecture: 3-Layer(aba) Sandwich
Topology: Rossmann fold
Homology: von Willebrand factor, type A domain
Occurring in:
  1. Integrin alpha-2
The deposited structure of PDB entry 6nda contains 6 copies of CATH domain 3.40.50.410 (Rossmann fold) in Integrin alpha-2. Showing 1 copy in chain C.

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