› › Structure analysis

Cryo-EM structure of 90S small subunit preribosomes in transition states (State A)

Electron Microscopy
3.2Å resolution
PDB entry 6lqp coloured by chain, front view.
PDB entry 6lqp coloured by chain, side view.
PDB entry 6lqp coloured by chain, top view.
Source organism: Saccharomyces cerevisiae S288C
Assembly composition:
hetero 73-mer (preferred)
Entry contents: 66 distinct polypeptide molecules
3 distinct RNA molecules

Quick links

Assemblies

Assembly 1 (preferred)
Download    3D Visualisation
Assembly Name: RCL1-BMS1 40S ribosomal subunit maturation complex and RNA
hide full assembly name
Multimeric state: hetero 73-mer
PDBe Complex ID: PDB-CPX-126871

Macromolecules

Small ribosomal subunit protein eS1A
Chain: SC
Length: 255 amino acids
Theoretical weight: 28.8 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P33442 (Residues: 1-255; Coverage: 100%)
Gene names: L9753.9, PLC1, RPS10A, RPS1A, YLR441C
Pfam: Ribosomal S3Ae family
InterPro:
Small ribosomal subunit protein eS1A in PDB entry 6lqp, assembly 1, front view.
Small ribosomal subunit protein eS1A in PDB entry 6lqp, assembly 1, side view.
Small ribosomal subunit protein eS1A in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

Small ribosomal subunit protein eS4A
Chain: SF
Length: 261 amino acids
Theoretical weight: 29.47 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P0CX35 (Residues: 1-261; Coverage: 100%)
Gene names: J2186, RPS4A, RPS7B, YJR145C
Pfam:
InterPro:
Small ribosomal subunit protein eS4A in PDB entry 6lqp, assembly 1, front view.
Small ribosomal subunit protein eS4A in PDB entry 6lqp, assembly 1, side view.
Small ribosomal subunit protein eS4A in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

Small ribosomal subunit protein uS7
Chain: SG
Length: 225 amino acids
Theoretical weight: 25.07 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P26783 (Residues: 1-225; Coverage: 100%)
Gene names: J2045, RPS2, RPS5, YJR123W
Pfam: Ribosomal protein S7p/S5e
InterPro:
Small ribosomal subunit protein uS7 in PDB entry 6lqp, assembly 1, front view.
Small ribosomal subunit protein uS7 in PDB entry 6lqp, assembly 1, side view.
Small ribosomal subunit protein uS7 in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

Small ribosomal subunit protein eS6A
Chain: SH
Length: 236 amino acids
Theoretical weight: 27.05 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P0CX37 (Residues: 1-236; Coverage: 100%)
Gene names: LPG18C, RPS101, RPS10B, RPS6A, YPL090C
Pfam: Ribosomal protein S6e
InterPro:
Small ribosomal subunit protein eS6A in PDB entry 6lqp, assembly 1, front view.
Small ribosomal subunit protein eS6A in PDB entry 6lqp, assembly 1, side view.
Small ribosomal subunit protein eS6A in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

Small ribosomal subunit protein eS7A
Chain: SI
Length: 190 amino acids
Theoretical weight: 21.66 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P26786 (Residues: 1-190; Coverage: 100%)
Gene names: RPS30, RPS7A, YOR096W, YOR3177W
Pfam: Ribosomal protein S7e
InterPro:
Small ribosomal subunit protein eS7A in PDB entry 6lqp, assembly 1, front view.
Small ribosomal subunit protein eS7A in PDB entry 6lqp, assembly 1, side view.
Small ribosomal subunit protein eS7A in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

Small ribosomal subunit protein eS8A
Chain: SJ
Length: 200 amino acids
Theoretical weight: 22.54 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P0CX39 (Residues: 1-200; Coverage: 100%)
Gene names: RPS14A, RPS8A, YBL06.05, YBL0613, YBL072C
Pfam: Ribosomal protein S8e
InterPro:
Small ribosomal subunit protein eS8A in PDB entry 6lqp, assembly 1, front view.
Small ribosomal subunit protein eS8A in PDB entry 6lqp, assembly 1, side view.
Small ribosomal subunit protein eS8A in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

Small ribosomal subunit protein uS4A
Chain: SK
Length: 197 amino acids
Theoretical weight: 22.49 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: O13516 (Residues: 1-197; Coverage: 100%)
Gene names: RPS13A, RPS9A, YPL081W, YS11A
Pfam:
InterPro:
Small ribosomal subunit protein uS4A in PDB entry 6lqp, assembly 1, front view.
Small ribosomal subunit protein uS4A in PDB entry 6lqp, assembly 1, side view.
Small ribosomal subunit protein uS4A in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

Small ribosomal subunit protein uS17A
Chain: SM
Length: 156 amino acids
Theoretical weight: 17.79 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P0CX47 (Residues: 1-156; Coverage: 100%)
Gene names: RPS11A, RPS18A, YD9813.03, YDR025W
Pfam:
InterPro:
Small ribosomal subunit protein uS17A in PDB entry 6lqp, assembly 1, front view.
Small ribosomal subunit protein uS17A in PDB entry 6lqp, assembly 1, side view.
Small ribosomal subunit protein uS17A in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

Small ribosomal subunit protein eS12
Chain: SN
Length: 143 amino acids
Theoretical weight: 15.49 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P48589 (Residues: 1-143; Coverage: 100%)
Gene names: RPS12, YOR369C
Pfam: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
InterPro:
Small ribosomal subunit protein eS12 in PDB entry 6lqp, assembly 1, front view.
Small ribosomal subunit protein eS12 in PDB entry 6lqp, assembly 1, side view.
Small ribosomal subunit protein eS12 in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

Small ribosomal subunit protein uS15
Chain: SO
Length: 151 amino acids
Theoretical weight: 17.06 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P05756 (Residues: 1-151; Coverage: 100%)
Gene names: D4252, RPS13, RPS13C, YD9609.18, YDR064W
Pfam:
InterPro:
Small ribosomal subunit protein uS15 in PDB entry 6lqp, assembly 1, front view.
Small ribosomal subunit protein uS15 in PDB entry 6lqp, assembly 1, side view.
Small ribosomal subunit protein uS15 in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

Small ribosomal subunit protein uS11A
Chain: SP
Length: 137 amino acids
Theoretical weight: 14.56 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P06367 (Residues: 1-137; Coverage: 100%)
Gene names: CRY1, RPL59, RPS14A, YCR031C, YCR31C
Pfam: Ribosomal protein S11
InterPro:
Small ribosomal subunit protein uS11A in PDB entry 6lqp, assembly 1, front view.
Small ribosomal subunit protein uS11A in PDB entry 6lqp, assembly 1, side view.
Small ribosomal subunit protein uS11A in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

Small ribosomal subunit protein uS9A
Chain: SR
Length: 143 amino acids
Theoretical weight: 15.88 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P0CX51 (Residues: 1-143; Coverage: 100%)
Gene names: RP61R, RPS16A, YM9375.12, YMR143W
Pfam: Ribosomal protein S9/S16
InterPro:
Small ribosomal subunit protein uS9A in PDB entry 6lqp, assembly 1, front view.
Small ribosomal subunit protein uS9A in PDB entry 6lqp, assembly 1, side view.
Small ribosomal subunit protein uS9A in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

Small ribosomal subunit protein uS13A
Chain: ST
Length: 146 amino acids
Theoretical weight: 17.07 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P0CX55 (Residues: 1-146; Coverage: 100%)
Gene names: D9461.35, RPS18A, YDR450W
Pfam: Ribosomal protein S13/S18
InterPro:
Small ribosomal subunit protein uS13A in PDB entry 6lqp, assembly 1, front view.
Small ribosomal subunit protein uS13A in PDB entry 6lqp, assembly 1, side view.
Small ribosomal subunit protein uS13A in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

Small ribosomal subunit protein uS8B
Chain: SX
Length: 130 amino acids
Theoretical weight: 14.65 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: Q3E7Y3 (Residues: 1-130; Coverage: 100%)
Gene names: L8039.6, RPS22B, RPS24B, YLR367W
Pfam: Ribosomal protein S8
InterPro:
Small ribosomal subunit protein uS8B in PDB entry 6lqp, assembly 1, front view.
Small ribosomal subunit protein uS8B in PDB entry 6lqp, assembly 1, side view.
Small ribosomal subunit protein uS8B in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

Small ribosomal subunit protein uS12A
Chain: SY
Length: 145 amino acids
Theoretical weight: 16.07 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P0CX29 (Residues: 1-145; Coverage: 100%)
Gene names: G6178, RPS23A, RPS28A, YGR118W
Pfam: Ribosomal protein S12/S23
InterPro:
Small ribosomal subunit protein uS12A in PDB entry 6lqp, assembly 1, front view.
Small ribosomal subunit protein uS12A in PDB entry 6lqp, assembly 1, side view.
Small ribosomal subunit protein uS12A in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

Small ribosomal subunit protein eS24A
Chain: SZ
Length: 135 amino acids
Theoretical weight: 15.36 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P0CX31 (Residues: 1-135; Coverage: 100%)
Gene names: RPS24A, RPS24EA, YER074W
Pfam: Ribosomal protein S24e
InterPro:
Small ribosomal subunit protein eS24A in PDB entry 6lqp, assembly 1, front view.
Small ribosomal subunit protein eS24A in PDB entry 6lqp, assembly 1, side view.
Small ribosomal subunit protein eS24A in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

Small ribosomal subunit protein eS27A
Chain: Sc
Length: 82 amino acids
Theoretical weight: 8.89 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P35997 (Residues: 1-82; Coverage: 100%)
Gene names: RPS27A, YKL156W
Pfam: Ribosomal protein S27
InterPro:
Small ribosomal subunit protein eS27A in PDB entry 6lqp, assembly 1, front view.
Small ribosomal subunit protein eS27A in PDB entry 6lqp, assembly 1, side view.
Small ribosomal subunit protein eS27A in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

Small ribosomal subunit protein eS28A
Chain: Sd
Length: 67 amino acids
Theoretical weight: 7.61 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: Q3E7X9 (Residues: 1-67; Coverage: 100%)
Gene names: O3600, RPS28A, RPS33, RPS33A, YOR167C
Pfam: Ribosomal protein S28e
InterPro:
Small ribosomal subunit protein eS28A in PDB entry 6lqp, assembly 1, front view.
Small ribosomal subunit protein eS28A in PDB entry 6lqp, assembly 1, side view.
Small ribosomal subunit protein eS28A in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

rRNA 2'-O-methyltransferase fibrillarin
Chains: 3B, 3C
Length: 327 amino acids
Theoretical weight: 34.53 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P15646 (Residues: 1-327; Coverage: 100%)
Gene names: D2870, LOT3, NOP1, YDL014W
Pfam: Fibrillarin
InterPro:
rRNA 2'-O-methyltransferase fibrillarin in PDB entry 6lqp, assembly 1, front view.
rRNA 2'-O-methyltransferase fibrillarin in PDB entry 6lqp, assembly 1, side view.
rRNA 2'-O-methyltransferase fibrillarin in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

Nucleolar protein 56
Chain: 3D
Length: 504 amino acids
Theoretical weight: 56.96 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: Q12460 (Residues: 1-504; Coverage: 100%)
Gene names: L8167.9, NOP56, SIK1, YLR197W
Pfam:
InterPro:
Nucleolar protein 56 in PDB entry 6lqp, assembly 1, front view.
Nucleolar protein 56 in PDB entry 6lqp, assembly 1, side view.
Nucleolar protein 56 in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

Nucleolar protein 58
Chain: 3E
Length: 511 amino acids
Theoretical weight: 57.06 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: Q12499 (Residues: 1-511; Coverage: 100%)
Gene names: NOP5, NOP58, O6108, YOR310C
Pfam:
InterPro:
Nucleolar protein 58 in PDB entry 6lqp, assembly 1, front view.
Nucleolar protein 58 in PDB entry 6lqp, assembly 1, side view.
Nucleolar protein 58 in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

Ribosomal RNA-processing protein 9
Chain: 3F
Length: 573 amino acids
Theoretical weight: 65.15 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: Q06506 (Residues: 1-573; Coverage: 100%)
Gene names: RRP9, YPR137W
Pfam: WD domain, G-beta repeat
InterPro:
Ribosomal RNA-processing protein 9 in PDB entry 6lqp, assembly 1, front view.
Ribosomal RNA-processing protein 9 in PDB entry 6lqp, assembly 1, side view.
Ribosomal RNA-processing protein 9 in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

13 kDa ribonucleoprotein-associated protein
Chains: 3G, 3H
Length: 126 amino acids
Theoretical weight: 13.58 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P39990 (Residues: 1-126; Coverage: 100%)
Gene names: SNU13, YEL026W
Pfam: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
InterPro:
13 kDa ribonucleoprotein-associated protein in PDB entry 6lqp, assembly 1, front view.
13 kDa ribonucleoprotein-associated protein in PDB entry 6lqp, assembly 1, side view.
13 kDa ribonucleoprotein-associated protein in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

U3 small nucleolar RNA-associated protein 4
Chain: A4
Length: 776 amino acids
Theoretical weight: 87.91 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: Q06679 (Residues: 1-776; Coverage: 100%)
Gene names: UTP4, YDR324C
Pfam: WD domain, G-beta repeat
InterPro:
U3 small nucleolar RNA-associated protein 4 in PDB entry 6lqp, assembly 1, front view.
U3 small nucleolar RNA-associated protein 4 in PDB entry 6lqp, assembly 1, side view.
U3 small nucleolar RNA-associated protein 4 in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

U3 small nucleolar RNA-associated protein 5
Chain: A5
Length: 643 amino acids
Theoretical weight: 72.08 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: Q04177 (Residues: 1-643; Coverage: 100%)
Gene names: D9509.17, UTP5, YDR398W
Pfam: Dip2/Utp12 Family
InterPro:
U3 small nucleolar RNA-associated protein 5 in PDB entry 6lqp, assembly 1, front view.
U3 small nucleolar RNA-associated protein 5 in PDB entry 6lqp, assembly 1, side view.
U3 small nucleolar RNA-associated protein 5 in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

U3 small nucleolar RNA-associated protein 8
Chain: A8
Length: 713 amino acids
Theoretical weight: 80.27 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P53276 (Residues: 1-713; Coverage: 100%)
Gene names: UTP8, YGR128C
Pfam: Utp8 family
InterPro: U3 small nucleolar RNA-associated protein 8
U3 small nucleolar RNA-associated protein 8 in PDB entry 6lqp, assembly 1, front view.
U3 small nucleolar RNA-associated protein 8 in PDB entry 6lqp, assembly 1, side view.
U3 small nucleolar RNA-associated protein 8 in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

U3 small nucleolar RNA-associated protein 9
Chain: A9
Length: 575 amino acids
Theoretical weight: 65.35 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P38882 (Residues: 1-575; Coverage: 100%)
Gene names: UTP9, YHR196W
InterPro: WD40/YVTN repeat-like-containing domain superfamily
U3 small nucleolar RNA-associated protein 9 in PDB entry 6lqp, assembly 1, front view.
U3 small nucleolar RNA-associated protein 9 in PDB entry 6lqp, assembly 1, side view.
U3 small nucleolar RNA-associated protein 9 in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

U3 small nucleolar RNA-associated protein 10
Chain: AE
Length: 1769 amino acids
Theoretical weight: 200.3 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P42945 (Residues: 1-1769; Coverage: 100%)
Gene names: J0808, UTP10, YJL109C
Pfam:
InterPro:
U3 small nucleolar RNA-associated protein 10 in PDB entry 6lqp, assembly 1, front view.
U3 small nucleolar RNA-associated protein 10 in PDB entry 6lqp, assembly 1, side view.
U3 small nucleolar RNA-associated protein 10 in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

U3 small nucleolar RNA-associated protein 15
Chain: AF
Length: 513 amino acids
Theoretical weight: 57.77 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: Q04305 (Residues: 1-513; Coverage: 100%)
Gene names: UTP15, YM9582.18, YMR093W
Pfam:
InterPro:
U3 small nucleolar RNA-associated protein 15 in PDB entry 6lqp, assembly 1, front view.
U3 small nucleolar RNA-associated protein 15 in PDB entry 6lqp, assembly 1, side view.
U3 small nucleolar RNA-associated protein 15 in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

NET1-associated nuclear protein 1
Chain: AG
Length: 896 amino acids
Theoretical weight: 101.34 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: Q02931 (Residues: 1-896; Coverage: 100%)
Gene names: NAN1, UTP17, YPL126W
Pfam: WD domain, G-beta repeat
InterPro:
NET1-associated nuclear protein 1 in PDB entry 6lqp, assembly 1, front view.
NET1-associated nuclear protein 1 in PDB entry 6lqp, assembly 1, side view.
NET1-associated nuclear protein 1 in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

Periodic tryptophan protein 2
Chain: B1
Length: 923 amino acids
Theoretical weight: 104.1 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P25635 (Residues: 1-923; Coverage: 100%)
Gene names: PWP2, UTP1, YCR057C, YCR55C/YCR57C/YCR58C
Pfam:
InterPro:
Periodic tryptophan protein 2 in PDB entry 6lqp, assembly 1, front view.
Periodic tryptophan protein 2 in PDB entry 6lqp, assembly 1, side view.
Periodic tryptophan protein 2 in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

U3 small nucleolar RNA-associated protein 12
Chain: B2
Length: 943 amino acids
Theoretical weight: 106.48 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: Q12220 (Residues: 1-943; Coverage: 100%)
Gene names: DIP2, L3116, L9233.1, UTP12, YLR129W
Pfam:
InterPro:
U3 small nucleolar RNA-associated protein 12 in PDB entry 6lqp, assembly 1, front view.
U3 small nucleolar RNA-associated protein 12 in PDB entry 6lqp, assembly 1, side view.
U3 small nucleolar RNA-associated protein 12 in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

U3 small nucleolar RNA-associated protein 13
Chain: B3
Length: 817 amino acids
Theoretical weight: 91.13 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: Q05946 (Residues: 1-817; Coverage: 100%)
Gene names: UTP13, YLR222C
Pfam:
InterPro:
U3 small nucleolar RNA-associated protein 13 in PDB entry 6lqp, assembly 1, front view.
U3 small nucleolar RNA-associated protein 13 in PDB entry 6lqp, assembly 1, side view.
U3 small nucleolar RNA-associated protein 13 in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

U3 small nucleolar RNA-associated protein 18
Chain: B8
Length: 594 amino acids
Theoretical weight: 66.49 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P40362 (Residues: 1-594; Coverage: 100%)
Gene names: HRE594, J1098, UTP18, YJL069C
Pfam: WD domain, G-beta repeat
InterPro:
U3 small nucleolar RNA-associated protein 18 in PDB entry 6lqp, assembly 1, front view.
U3 small nucleolar RNA-associated protein 18 in PDB entry 6lqp, assembly 1, side view.
U3 small nucleolar RNA-associated protein 18 in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

U3 small nucleolar RNA-associated protein 21
Chain: BE
Length: 939 amino acids
Theoretical weight: 104.93 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: Q06078 (Residues: 1-939; Coverage: 100%)
Gene names: L8084.22, UTP21, YLR409C
Pfam:
InterPro:
U3 small nucleolar RNA-associated protein 21 in PDB entry 6lqp, assembly 1, front view.
U3 small nucleolar RNA-associated protein 21 in PDB entry 6lqp, assembly 1, side view.
U3 small nucleolar RNA-associated protein 21 in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

U3 small nucleolar RNA-associated protein 6
Chain: B6
Length: 440 amino acids
Theoretical weight: 52.5 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: Q02354 (Residues: 1-440; Coverage: 100%)
Gene names: D9461.34, UTP6, YDR449C
Pfam: U3 small nucleolar RNA-associated protein 6
InterPro:
U3 small nucleolar RNA-associated protein 6 in PDB entry 6lqp, assembly 1, front view.
U3 small nucleolar RNA-associated protein 6 in PDB entry 6lqp, assembly 1, side view.
U3 small nucleolar RNA-associated protein 6 in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

U3 small nucleolar RNA-associated protein 16
Chain: 5B
Length: 214 amino acids
Theoretical weight: 24.43 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: Q08492 (Residues: 1-214; Coverage: 100%)
Gene names: BUD21, UTP16, YOR078W, YOR29-29
Pfam: U3 snoRNA associated
InterPro: U3 small nucleolar RNA-associated protein 16
U3 small nucleolar RNA-associated protein 16 in PDB entry 6lqp, assembly 1, front view.
U3 small nucleolar RNA-associated protein 16 in PDB entry 6lqp, assembly 1, side view.
U3 small nucleolar RNA-associated protein 16 in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

U3 small nucleolar RNA-associated protein 7
Chain: 5C
Length: 554 amino acids
Theoretical weight: 62.42 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P40055 (Residues: 1-554; Coverage: 100%)
Gene names: KRE31, UTP7, YER082C
Pfam:
InterPro:
U3 small nucleolar RNA-associated protein 7 in PDB entry 6lqp, assembly 1, front view.
U3 small nucleolar RNA-associated protein 7 in PDB entry 6lqp, assembly 1, side view.
U3 small nucleolar RNA-associated protein 7 in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

U3 small nucleolar RNA-associated protein 11
Chain: 5D
Length: 250 amino acids
Theoretical weight: 29.81 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P34247 (Residues: 1-250; Coverage: 100%)
Gene names: UTP11, YKL099C, YKL449
Pfam: Utp11 protein
InterPro: Small-subunit processome, Utp11
U3 small nucleolar RNA-associated protein 11 in PDB entry 6lqp, assembly 1, front view.
U3 small nucleolar RNA-associated protein 11 in PDB entry 6lqp, assembly 1, side view.
U3 small nucleolar RNA-associated protein 11 in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

U3 small nucleolar RNA-associated protein MPP10
Chain: 5E
Length: 593 amino acids
Theoretical weight: 67.04 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P47083 (Residues: 1-593; Coverage: 100%)
Gene names: J1411, MPP10, YJR002W, YJR83.5
Pfam: Mpp10 protein
InterPro: U3 small nucleolar ribonucleoprotein complex, subunit Mpp10
U3 small nucleolar RNA-associated protein MPP10 in PDB entry 6lqp, assembly 1, front view.
U3 small nucleolar RNA-associated protein MPP10 in PDB entry 6lqp, assembly 1, side view.
U3 small nucleolar RNA-associated protein MPP10 in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

U3 small nucleolar ribonucleoprotein protein IMP3
Chain: 5F
Length: 183 amino acids
Theoretical weight: 21.93 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P32899 (Residues: 1-183; Coverage: 100%)
Gene names: IMP3, YHR148W
Pfam:
InterPro:
U3 small nucleolar ribonucleoprotein protein IMP3 in PDB entry 6lqp, assembly 1, front view.
U3 small nucleolar ribonucleoprotein protein IMP3 in PDB entry 6lqp, assembly 1, side view.
U3 small nucleolar ribonucleoprotein protein IMP3 in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

U3 small nucleolar ribonucleoprotein protein IMP4
Chain: 5G
Length: 290 amino acids
Theoretical weight: 33.54 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P53941 (Residues: 1-290; Coverage: 100%)
Gene names: IMP4, N2353, YNL075W
Pfam: Brix domain
InterPro:
U3 small nucleolar ribonucleoprotein protein IMP4 in PDB entry 6lqp, assembly 1, front view.
U3 small nucleolar ribonucleoprotein protein IMP4 in PDB entry 6lqp, assembly 1, side view.
U3 small nucleolar ribonucleoprotein protein IMP4 in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

Something about silencing protein 10
Chain: 5H
Length: 610 amino acids
Theoretical weight: 70.36 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: Q12136 (Residues: 1-610; Coverage: 100%)
Gene names: D1545, SAS10, UTP3, YDL153C
Pfam:
InterPro:
Something about silencing protein 10 in PDB entry 6lqp, assembly 1, front view.
Something about silencing protein 10 in PDB entry 6lqp, assembly 1, side view.
Something about silencing protein 10 in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

Protein SOF1
Chain: 5I
Length: 489 amino acids
Theoretical weight: 56.89 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P33750 (Residues: 1-489; Coverage: 100%)
Gene names: L1339, SOF1, YLL011W
Pfam:
InterPro:
Protein SOF1 in PDB entry 6lqp, assembly 1, front view.
Protein SOF1 in PDB entry 6lqp, assembly 1, side view.
Protein SOF1 in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

rRNA-processing protein FCF2
Chain: 5J
Length: 217 amino acids
Theoretical weight: 25.69 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: Q12035 (Residues: 1-217; Coverage: 100%)
Gene names: FCF2, L2128, YLR051C
Pfam: Fcf2 pre-rRNA processing
InterPro:
rRNA-processing protein FCF2 in PDB entry 6lqp, assembly 1, front view.
rRNA-processing protein FCF2 in PDB entry 6lqp, assembly 1, side view.
rRNA-processing protein FCF2 in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

rRNA-processing protein FCF1
Chain: 5K
Length: 189 amino acids
Theoretical weight: 21.65 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: Q05498 (Residues: 1-189; Coverage: 100%)
Gene names: D9651.9, FCF1, YDR339C
Pfam: Fcf1
InterPro:
rRNA-processing protein FCF1 in PDB entry 6lqp, assembly 1, front view.
rRNA-processing protein FCF1 in PDB entry 6lqp, assembly 1, side view.
rRNA-processing protein FCF1 in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

Ribosome biogenesis protein ENP2
Chain: RA
Length: 707 amino acids
Theoretical weight: 81.86 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P48234 (Residues: 1-707; Coverage: 100%)
Gene names: ENP2, G6623, YGR145W
Pfam: NUC153 domain
InterPro:
Ribosome biogenesis protein ENP2 in PDB entry 6lqp, assembly 1, front view.
Ribosome biogenesis protein ENP2 in PDB entry 6lqp, assembly 1, side view.
Ribosome biogenesis protein ENP2 in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

U3 small nucleolar ribonucleoprotein protein LCP5
Chain: RB
Length: 357 amino acids
Theoretical weight: 40.86 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P40079 (Residues: 1-357; Coverage: 100%)
Gene names: LCP5, SYGP-ORF43, YER127W
Pfam: Sas10/Utp3/C1D family
InterPro: Sas10/Utp3/C1D
U3 small nucleolar ribonucleoprotein protein LCP5 in PDB entry 6lqp, assembly 1, front view.
U3 small nucleolar ribonucleoprotein protein LCP5 in PDB entry 6lqp, assembly 1, side view.
U3 small nucleolar ribonucleoprotein protein LCP5 in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

KRR1 small subunit processome component
Chain: RC
Length: 316 amino acids
Theoretical weight: 37.23 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P25586 (Residues: 1-316; Coverage: 100%)
Gene names: KRR1, YCL059C, YCL59C
Pfam:
InterPro:
KRR1 small subunit processome component in PDB entry 6lqp, assembly 1, front view.
KRR1 small subunit processome component in PDB entry 6lqp, assembly 1, side view.
KRR1 small subunit processome component in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

U3 small nucleolar RNA-associated protein 22
Chain: RE
Length: 1237 amino acids
Theoretical weight: 140.66 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P53254 (Residues: 1-1237; Coverage: 100%)
Gene names: UTP22, YGR090W
Pfam:
InterPro:
U3 small nucleolar RNA-associated protein 22 in PDB entry 6lqp, assembly 1, front view.
U3 small nucleolar RNA-associated protein 22 in PDB entry 6lqp, assembly 1, side view.
U3 small nucleolar RNA-associated protein 22 in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

Ribosomal RNA-processing protein 7
Chain: RF
Length: 297 amino acids
Theoretical weight: 34.53 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P25368 (Residues: 1-297; Coverage: 100%)
Gene names: RRP7, YCL031C, YCL184, YCL31C
Pfam:
InterPro:
Ribosomal RNA-processing protein 7 in PDB entry 6lqp, assembly 1, front view.
Ribosomal RNA-processing protein 7 in PDB entry 6lqp, assembly 1, side view.
Ribosomal RNA-processing protein 7 in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

Ribosomal RNA small subunit methyltransferase NEP1
Chains: RG, RH
Length: 252 amino acids
Theoretical weight: 27.94 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: Q06287 (Residues: 1-252; Coverage: 100%)
Gene names: EMG1, L9470.5, NEP1, YLR186W
Pfam: EMG1/NEP1 methyltransferase
InterPro:
Ribosomal RNA small subunit methyltransferase NEP1 in PDB entry 6lqp, assembly 1, front view.
Ribosomal RNA small subunit methyltransferase NEP1 in PDB entry 6lqp, assembly 1, side view.
Ribosomal RNA small subunit methyltransferase NEP1 in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

Ribosome biogenesis protein UTP30
Chain: RI
Length: 274 amino acids
Theoretical weight: 31.67 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P36144 (Residues: 1-274; Coverage: 100%)
Gene names: UTP30, YKR060W
Pfam: Ribosomal protein L1p/L10e family
InterPro:
Ribosome biogenesis protein UTP30 in PDB entry 6lqp, assembly 1, front view.
Ribosome biogenesis protein UTP30 in PDB entry 6lqp, assembly 1, side view.
Ribosome biogenesis protein UTP30 in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

Ribosome biogenesis protein BMS1
Chain: RJ
Length: 1183 amino acids
Theoretical weight: 135.79 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: Q08965 (Residues: 1-1183; Coverage: 100%)
Gene names: BMS1, YPL217C
Pfam:
InterPro:
Ribosome biogenesis protein BMS1 in PDB entry 6lqp, assembly 1, front view.
Ribosome biogenesis protein BMS1 in PDB entry 6lqp, assembly 1, side view.
Ribosome biogenesis protein BMS1 in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

RNA 3'-terminal phosphate cyclase-like protein
Chain: RK
Length: 367 amino acids
Theoretical weight: 40.22 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: Q08096 (Residues: 1-367; Coverage: 100%)
Gene names: RCL1, RTC1, YOL010W
Pfam:
InterPro:
RNA 3'-terminal phosphate cyclase-like protein in PDB entry 6lqp, assembly 1, front view.
RNA 3'-terminal phosphate cyclase-like protein in PDB entry 6lqp, assembly 1, side view.
RNA 3'-terminal phosphate cyclase-like protein in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

RNA cytidine acetyltransferase
Chains: RL, RM
Length: 1056 amino acids
Theoretical weight: 119.51 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P53914 (Residues: 1-1056; Coverage: 100%)
Gene names: KRE33, N1216, N1858, NAT10, RRA1, YNL132W
Pfam:
InterPro:
RNA cytidine acetyltransferase in PDB entry 6lqp, assembly 1, front view.
RNA cytidine acetyltransferase in PDB entry 6lqp, assembly 1, side view.
RNA cytidine acetyltransferase in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

Nucleolar complex protein 14
Chain: RN
Length: 810 amino acids
Theoretical weight: 94.46 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: Q99207 (Residues: 1-810; Coverage: 100%)
Gene names: D1566, NOP14, UTP2, YDL148C
Pfam: Nop14-like family
InterPro: Nucleolar protein 14
Nucleolar complex protein 14 in PDB entry 6lqp, assembly 1, front view.
Nucleolar complex protein 14 in PDB entry 6lqp, assembly 1, side view.
Nucleolar complex protein 14 in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

Nucleolar complex protein 4
Chain: RO
Length: 552 amino acids
Theoretical weight: 63.71 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: Q06512 (Residues: 1-552; Coverage: 100%)
Gene names: NOC4, UTP19, YPR144C
Pfam: CBF/Mak21 family
InterPro:
Nucleolar complex protein 4 in PDB entry 6lqp, assembly 1, front view.
Nucleolar complex protein 4 in PDB entry 6lqp, assembly 1, side view.
Nucleolar complex protein 4 in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

U3 small nucleolar RNA-associated protein 20
Chain: RP
Length: 2493 amino acids
Theoretical weight: 287.92 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P35194 (Residues: 1-2493; Coverage: 100%)
Gene names: UTP20, YBL004W, YBL0101
Pfam:
InterPro:
U3 small nucleolar RNA-associated protein 20 in PDB entry 6lqp, assembly 1, front view.
U3 small nucleolar RNA-associated protein 20 in PDB entry 6lqp, assembly 1, side view.
U3 small nucleolar RNA-associated protein 20 in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

U3 small nucleolar RNA-associated protein 14
Chain: RQ
Length: 899 amino acids
Theoretical weight: 103.19 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: Q04500 (Residues: 1-899; Coverage: 100%)
Gene names: UTP14, YML093W
Pfam: Utp14 protein
InterPro: Small-subunit processome, Utp14
U3 small nucleolar RNA-associated protein 14 in PDB entry 6lqp, assembly 1, front view.
U3 small nucleolar RNA-associated protein 14 in PDB entry 6lqp, assembly 1, side view.
U3 small nucleolar RNA-associated protein 14 in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

Essential nuclear protein 1
Chain: RS
Length: 483 amino acids
Theoretical weight: 55.21 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P38333 (Residues: 1-483; Coverage: 100%)
Gene names: ENP1, MEG1, YBR1635, YBR247C
Pfam: Bystin
InterPro: Bystin
Essential nuclear protein 1 in PDB entry 6lqp, assembly 1, front view.
Essential nuclear protein 1 in PDB entry 6lqp, assembly 1, side view.
Essential nuclear protein 1 in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

Pno1
Chain: RT
Length: 326 amino acids
Theoretical weight: 36.36 KDa
Source organism: Saccharomyces cerevisiae S288C
InterPro:
Pno1 in PDB entry 6lqp, assembly 1, front view.
Pno1 in PDB entry 6lqp, assembly 1, side view.
Pno1 in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

Protein FAF1
Chain: RV
Length: 346 amino acids
Theoretical weight: 38.96 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P40546 (Residues: 1-346; Coverage: 100%)
Gene names: FAF1, YIL019W
Protein FAF1 in PDB entry 6lqp, assembly 1, front view.
Protein FAF1 in PDB entry 6lqp, assembly 1, side view.
Protein FAF1 in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

Regulator of rDNA transcription protein 14
Chain: RW
Length: 206 amino acids
Theoretical weight: 23.9 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P40470 (Residues: 1-206; Coverage: 100%)
Gene names: RRT14, YIL127C
Pfam: Regular of rDNA transcription protein 14
InterPro: Regulator of rDNA transcription 14
Regulator of rDNA transcription protein 14 in PDB entry 6lqp, assembly 1, front view.
Regulator of rDNA transcription protein 14 in PDB entry 6lqp, assembly 1, side view.
Regulator of rDNA transcription protein 14 in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

Protein BFR2
Chain: RY
Length: 534 amino acids
Theoretical weight: 61.29 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: Q06631 (Residues: 1-534; Coverage: 100%)
Gene names: BFR2, YDR299W
Pfam:
InterPro:
Protein BFR2 in PDB entry 6lqp, assembly 1, front view.
Protein BFR2 in PDB entry 6lqp, assembly 1, side view.
Protein BFR2 in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

Unassigned helices
Chain: X1
Length: 347 amino acids
Theoretical weight: 29.55 KDa
Source organism: Saccharomyces cerevisiae S288C
Unassigned helices in PDB entry 6lqp, assembly 1, front view.
Unassigned helices in PDB entry 6lqp, assembly 1, side view.
Unassigned helices in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar proteins

RNA chain 3A
Name: U3 snoRNA
Representative chains: 3A
Length: 333 nucleotides
Theoretical weight: 106.5 KDa
Rfam: Fungal small nucleolar RNA U3
U3 snoRNA in PDB entry 6lqp, assembly 1, front view.
U3 snoRNA in PDB entry 6lqp, assembly 1, side view.
U3 snoRNA in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar RNA

RNA chain 5A
Name: 5' ETS
Representative chains: 5A
Length: 700 nucleotides
Theoretical weight: 225.54 KDa
5' ETS in PDB entry 6lqp, assembly 1, front view.
5' ETS in PDB entry 6lqp, assembly 1, side view.
5' ETS in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar RNA

RNA chain SA
Name: 18S pre-rRNA
Representative chains: SA
Length: 1808 nucleotides
Theoretical weight: 582.38 KDa
Rfam: Eukaryotic small subunit ribosomal RNA
18S pre-rRNA in PDB entry 6lqp, assembly 1, front view.
18S pre-rRNA in PDB entry 6lqp, assembly 1, side view.
18S pre-rRNA in PDB entry 6lqp, assembly 1, top view.
Molecule details ›

Search similar RNA

Quick links