6l9m

X-ray diffraction
2.6Å resolution

H2-Ld complexed with AH1 peptide

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero trimer (preferred)
PDBe Complex ID:
PDB-CPX-134978 (preferred)
Entry contents:
3 distinct polypeptide molecules
Macromolecules (3 distinct):
H-2 class I histocompatibility antigen, L-D alpha chain Chains: A, D, G, J
Molecule details ›
Chains: A, D, G, J
Length: 278 amino acids
Theoretical weight: 32.13 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: P01897 (Residues: 24-301; Coverage: 82%)
Gene name: H2-L
Sequence domains:
Beta-2-microglobulin Chains: B, E, H, K
Molecule details ›
Chains: B, E, H, K
Length: 99 amino acids
Theoretical weight: 11.7 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: P01887 (Residues: 21-119; Coverage: 100%)
Gene name: B2m
Sequence domains: Immunoglobulin C1-set domain
SER-PRO-SER-TYR-VAL-TYR-HIS-GLN-PHE Chains: C, F, I, L
Molecule details ›
Chains: C, F, I, L
Length: 9 amino acids
Theoretical weight: 1.13 KDa
Source organism: Homo sapiens
Expression system: synthetic construct

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ALS BEAMLINE 8.2.2
Spacegroup: P1
Unit cell:
a: 51.865Å b: 88.39Å c: 105.71Å
α: 80.97° β: 75.96° γ: 88.24°
R-values:
R R work R free
0.214 0.213 0.249
Expression systems:
  • Escherichia coli
  • synthetic construct