› 6ijp

X-ray diffraction
1.85Å resolution

The structure of the ADAL-IMP complex

Released:
DOI: 10.2210/pdb6ijp/pdb
PDB entry 6ijp coloured by chain, front view.
PDB entry 6ijp coloured by chain, side view.
PDB entry 6ijp coloured by chain, top view.
Source organism: Arabidopsis thaliana
Primary publication:
Alternative conformation induced by substrate binding for Arabidopsis thalianaN6-methyl-AMP deaminase.
Jia Q, Xie W
Nucleic Acids Res 47 3233-3243 (2019)
PMID: 30721978

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-185300 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
N6-mAMP deaminase Chain: A
Molecule details ›
Chain: A
Length: 376 amino acids
Theoretical weight: 42.49 KDa
Source organism: Arabidopsis thaliana
Expression system: Escherichia coli
UniProt:
  • Canonical: Q8LPL7 (Residues: 1-355; Coverage: 100%)
Gene names: ADAL, At4g04880, MAPDA
Sequence domains: Adenosine deaminase

Ligands and Environments

2 bound ligands:
Ligand ZN 1 x ZN
Ligand IMP 1 x IMP
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: NFPSS BEAMLINE BL19U1
Spacegroup: P212121
Unit cell:
a: 50.884Å b: 81.288Å c: 86.619Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.16 0.159 0.178
Expression system: Escherichia coli

Quick links

Citations

5 citation in other articles

Structural basis for the substrate specificity and catalytic features of pseudouridine kinase from Arabidopsis thaliana.
Kim et al. (2021)
4 more

1 mention without citation

Alternative conformation induced by substrate binding for Arabidopsis thalianaN6-methyl-AMP deaminase.
Jia et al. (2019)