› 6hj4

X-ray diffraction
2.43Å resolution

Crystal structure of Whitewater Arroyo virus GP1 glycoprotein at pH 7.5

Released:
DOI: 10.2210/pdb6hj4/pdb
PDB 6hj4 coloured by chain and viewed from the front.
PDB 6hj4 coloured by chain and viewed from the side.
PDB 6hj4 coloured by chain and viewed from the top.
Source organism: Whitewater Arroyo mammarenavirus
Primary publication:
Structure-Based Classification Defines the Discrete Conformational Classes Adopted by the Arenaviral GP1.
Pryce R, Ng WM, Zeltina A, Watanabe Y, El Omari K, Wagner A, Bowden TA
OpenAccess logo J Virol 93 (2019)
PMID: 30305351

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
monomeric (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Glycoprotein G1 Chain: A
Molecule details ›
Chain: A
Length: 165 amino acids
Theoretical weight: 18.65 KDa
Source organism: Whitewater Arroyo mammarenavirus
Expression system: Homo sapiens
UniProt:
  • Canonical: Q911P0 (Residues: 74-226; Coverage: 32%)
Gene names: GP-C, GPC

Ligands and Environments

2 bound ligands:
Ligand NAG 3 x NAG
Ligand CD 5 x CD
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I04, DIAMOND BEAMLINE I23
Spacegroup: P6322
Unit cell:
a: 106.66Å b: 106.66Å c: 74.81Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.222 0.22 0.252
Expression system: Homo sapiens

Quick links

Citations

1 review citation

Unraveling virus relationships by structure-based phylogenetic classification.
Ng et al. (2020)
4 other articles