› 6fju

X-ray diffraction
1.65Å resolution

Rpn11 homolog from Caldiarchaeum Subterraneum

Released:
DOI: 10.2210/pdb6fju/pdb
PDB 6fju coloured by chain and viewed from the front.
PDB 6fju coloured by chain and viewed from the side.
PDB 6fju coloured by chain and viewed from the top.
Source organism: Candidatus Caldarchaeum subterraneum
Primary publication:
Rpn11-mediated ubiquitin processing in an ancestral archaeal ubiquitination system.
Fuchs ACD, Maldoner L, Wojtynek M, Hartmann MD, Martin J
Nat Commun 9 2696 (2018)
PMID: 30002364

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
Sequence domain:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
MPN domain-containing protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 228 amino acids
Theoretical weight: 25.62 KDa
Source organism: Candidatus Caldarchaeum subterraneum
Expression system: Escherichia coli
UniProt:
  • Canonical: E6N8B9 (Residues: 1-202; Coverage: 100%)
Gene names: CSUB_C1473, HGMM_F04B03C04, HGMM_F21D07C20, HGMM_F30C12C32
Sequence domains: JAB1/Mov34/MPN/PAD-1 ubiquitin protease

Ligands and Environments

2 bound ligands:
Ligand ZN 2 x ZN
Ligand SO4 1 x SO4
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SLS BEAMLINE X10SA
Spacegroup: P212121
Unit cell:
a: 64.452Å b: 65.614Å c: 99.708Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.167 0.166 0.19
Expression system: Escherichia coli

Quick links

Citations

2 review citations

The Role of Deubiquitinases in Virus Replication and Host Innate Immune Response.
Zhang et al. (2022)
1 more