› 6f1l

X-ray diffraction
1.3Å resolution

Lysozyme crystallized in presence of 100 mM sodium phosphate at pH 4.5

Released:
DOI: 10.2210/pdb6f1l/pdb
PDB entry 6f1l coloured by chain, front view.
PDB entry 6f1l coloured by chain, side view.
PDB entry 6f1l coloured by chain, top view.
Source organism: Gallus gallus
Primary publication:
Orthorhombic lysozyme crystallization at acidic pH values driven by phosphate binding.
Plaza-Garrido M, Salinas-Garcia MC, Camara-Artigas A
Acta Crystallogr D Struct Biol 74 480-489 (2018)
PMID: 29717719

Function and Biology Details

Reaction catalysed: 
Hydrolysis of (1->4)-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues in a peptidoglycan and between N-acetyl-D-glucosamine residues in chitodextrins
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-132831 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Lysozyme C Chain: A
Molecule details ›
Chain: A
Length: 127 amino acids
Theoretical weight: 14.06 KDa
Source organism: Gallus gallus
UniProt:
  • Canonical: P00698 (Residues: 19-145; Coverage: 98%)
Gene name: LYZ
Sequence domains: C-type lysozyme/alpha-lactalbumin family
Structure domains: Lysozyme

Ligands and Environments

2 bound ligands:
Ligand PO4 1 x PO4
Ligand CL 1 x CL
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ALBA BEAMLINE XALOC
Spacegroup: P212121
Unit cell:
a: 30.109Å b: 56.165Å c: 73.329Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.145 0.144 0.18

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Citations

5 citation in other articles

On the complementarity of X-ray and NMR data.
Schirò et al. (2020)
4 more