› 6ek7

X-ray diffraction
1.8Å resolution

YaxA from Yersinia enterocolitica

Released:
DOI: 10.2210/pdb6ek7/pdb
PDB 6ek7 coloured by chain and viewed from the front.
PDB 6ek7 coloured by chain and viewed from the side.
PDB 6ek7 coloured by chain and viewed from the top.
Source organism: Yersinia enterocolitica
Primary publication:
Structure and mechanism of the two-component ��-helical pore-forming toxin YaxAB.
Bräuning B, Bertosin E, Praetorius F, Ihling C, Schatt A, Adler A, Richter K, Sinz A, Dietz H, Groll M
Nat Commun 9 1806 (2018)
PMID: 29728606

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
monomeric (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
YaxA Chain: A
Molecule details ›
Chain: A
Length: 410 amino acids
Theoretical weight: 45.88 KDa
Source organism: Yersinia enterocolitica
Expression system: Escherichia coli BL21

Ligands and Environments

1 bound ligand:
Ligand MPD 9 x MPD
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SLS BEAMLINE X06SA
Spacegroup: C2
Unit cell:
a: 203.76Å b: 24.05Å c: 109.42Å
α: 90° β: 113.92° γ: 90°
R-values:
R R work R free
0.191 0.19 0.228
Expression system: Escherichia coli BL21

Quick links

Citations

3 review citations

Toxigenic Properties of Yersinia enterocolitica Biotype 1A.
Platt-Samoraj A. (2022)
2 more

7 mentions without citation

Structural Basis of the Pore-Forming Toxin/Membrane Interaction.
Li et al. (2021)
6 more