6d3i

X-ray diffraction
3.2Å resolution

Function and Biology Details

Reaction catalysed:
(R)-(2,4-dichlorophenoxy)propanoate + 2-oxoglutarate + O(2) = 2,4-dichlorophenol + pyruvate + succinate + CO(2)
Biochemical function:
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo tetramer (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
(R)-phenoxypropionate/alpha-ketoglutarate-dioxygenase Chains: A, D, G, J
Molecule details ›
Chains: A, D, G, J
Length: 295 amino acids
Theoretical weight: 33.43 KDa
Source organism: Sphingobium herbicidovorans
Expression system: Escherichia coli
UniProt:
  • Canonical: Q8KSC8 (Residues: 1-295; Coverage: 100%)
Gene name: rdpA
Sequence domains: Taurine catabolism dioxygenase TauD, TfdA family
Structure domains: Clavaminate synthase-like

Ligands and Environments

3 bound ligands:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 22-BM
Spacegroup: P212121
Unit cell:
a: 94.927Å b: 109.98Å c: 116.145Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.186 0.176 0.273
Expression system: Escherichia coli