› › Structure analysis

Crystal structure of ykoY-mntP riboswitch chimera bound to cadmium

X-ray diffraction
2.698Å resolution
PDB entry 6cc3 coloured by chain, front view.
PDB entry 6cc3 coloured by chain, side view.
PDB entry 6cc3 coloured by chain, top view.
Source organism: Lactococcus lactis
Assembly composition:
monomeric (preferred)
Entry contents: 1 distinct RNA molecule

Quick links

Assemblies

Assembly 1
Download    3D Visualisation
Assembly Name: yybP-ykoY manganese riboswitch
hide full assembly name
Multimeric state: monomeric
Accessible surface area: 16831.85 Å2
Buried surface area: 2015.96 Å2
Dissociation area: 13.77 Å2
Dissociation energy (ΔGdiss): 1.61 kcal/mol
Dissociation entropy (TΔSdiss): 0.88 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-195846
Assembly 2 (preferred)
Download    3D Visualisation
Assembly Name: yybP-ykoY manganese riboswitch
hide full assembly name
Multimeric state: monomeric
Accessible surface area: 15895.14 Å2
Buried surface area: 1166.07 Å2
Dissociation area: 129.6 Å2
Dissociation energy (ΔGdiss): -4.99 kcal/mol
Dissociation entropy (TΔSdiss): 5.18 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-195846

Macromolecules

RNA chains A, B
Name: RNA (101-MER)
Representative chains: A, B
Source organism: Lactococcus lactis [1358]
Expression system: Not provided
Length: 101 nucleotides
Theoretical weight: 32.67 KDa
Rfam: yybP-ykoY manganese riboswitch
RNA (101-MER) in PDB entry 6cc3, assembly 2, front view.
RNA (101-MER) in PDB entry 6cc3, assembly 2, side view.
RNA (101-MER) in PDB entry 6cc3, assembly 2, top view.
Molecule details ›

Search similar RNA

Quick links