› 6btg

X-ray diffraction
1.7Å resolution

Crystal structure of deoxyribose-phosphate aldolase bound with DHAP from Bacillus Thuringiensis

Released:
DOI: 10.2210/pdb6btg/pdb
PDB entry 6btg coloured by chain, front view.
PDB entry 6btg coloured by chain, side view.
PDB entry 6btg coloured by chain, top view.
Source organism: Bacillus thuringiensis
Primary publication:
Salvage of the 5-deoxyribose byproduct of radical SAM enzymes.
Beaudoin GAW, Li Q, Folz J, Fiehn O, Goodsell JL, Angerhofer A, Bruner SD, Hanson AD
Nat Commun 9 3105 (2018)
PMID: 30082730

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo tetramer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-215435 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Fuculose phosphate aldolase Chain: A
Molecule details ›
Chain: A
Length: 222 amino acids
Theoretical weight: 24.94 KDa
Source organism: Bacillus thuringiensis
Expression system: Escherichia coli K-12
Structure domains: Class II aldolase/adducin N-terminal domain

Ligands and Environments

2 bound ligands:
Ligand MN 1 x MN
Ligand 13P 1 x 13P
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 21-ID-G
Spacegroup: P4212
Unit cell:
a: 105.104Å b: 105.104Å c: 49.366Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.188 0.186 0.225
Expression system: Escherichia coli K-12

Quick links

Citations

1 review citation

Discovery of novel pathways for carbohydrate metabolism.
Stack et al. (2021)
5 other articles

2 mentions without citation

An unusual metal-bound 4-fluorothreonine transaldolase from Streptomyces sp. MA37 catalyses promiscuous transaldol reactions.
Wu et al. (2020)
1 more