6z1u

Electron Microscopy
3.47Å resolution

bovine ATP synthase F1c8-peripheral stalk domain, state 3

Released:
Source organism: Bos taurus
Primary publication:
Structure of the dimeric ATP synthase from bovine mitochondria.
OpenAccess logo Proc Natl Acad Sci U S A 117 23519-23526 (2020)
PMID: 32900941
Related structures: EMD-11040

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero 21-mer (preferred)
PDBe Complex ID:
PDB-CPX-133613 (preferred)
Entry contents:
10 distinct polypeptide molecules
Macromolecules (10 distinct):
ATP synthase F(1) complex subunit alpha, mitochondrial Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 510 amino acids
Theoretical weight: 55.3 KDa
Source organism: Bos taurus
UniProt:
  • Canonical: P19483 (Residues: 44-553; Coverage: 92%)
Gene names: ATP5A1, ATP5A2, ATP5F1A
Sequence domains:
ATP synthase F(1) complex catalytic subunit beta, mitochondrial Chains: D, E, F
Molecule details ›
Chains: D, E, F
Length: 482 amino acids
Theoretical weight: 51.76 KDa
Source organism: Bos taurus
UniProt:
  • Canonical: P00829 (Residues: 47-528; Coverage: 91%)
Gene names: ATP5B, ATP5F1B
Sequence domains:
ATP synthase F(1) complex subunit gamma, mitochondrial Chain: G
Molecule details ›
Chain: G
Length: 273 amino acids
Theoretical weight: 30.3 KDa
Source organism: Bos taurus
UniProt:
  • Canonical: P05631 (Residues: 26-298; Coverage: 92%)
Gene names: ATP5C, ATP5C1, ATP5F1C
Sequence domains: ATP synthase
ATP synthase F(1) complex subunit delta, mitochondrial Chain: H
Molecule details ›
Chain: H
Length: 146 amino acids
Theoretical weight: 15.07 KDa
Source organism: Bos taurus
UniProt:
  • Canonical: P05630 (Residues: 23-168; Coverage: 87%)
Gene names: ATP5D, ATP5F1D
Sequence domains:
ATP synthase F(1) complex subunit epsilon, mitochondrial Chain: I
Molecule details ›
Chain: I
Length: 50 amino acids
Theoretical weight: 5.66 KDa
Source organism: Bos taurus
UniProt:
  • Canonical: P05632 (Residues: 2-51; Coverage: 98%)
Gene names: ATP5E, ATP5F1E
Sequence domains: Mitochondrial ATP synthase epsilon chain
ATPase inhibitor, mitochondrial Chain: J
Molecule details ›
Chain: J
Length: 66 amino acids
Theoretical weight: 7.46 KDa
Source organism: Bos taurus
Expression system: Escherichia coli
UniProt:
  • Canonical: P01096 (Residues: 26-85; Coverage: 55%)
Gene names: ATP5IF1, ATPI, ATPIF1
Sequence domains: Mitochondrial ATPase inhibitor, IATP
ATP synthase F(0) complex subunit C2, mitochondrial Chains: K, L, M, N, O, P, Q, R
Molecule details ›
Chains: K, L, M, N, O, P, Q, R
Length: 75 amino acids
Theoretical weight: 7.65 KDa
Source organism: Bos taurus
UniProt:
  • Canonical: P07926 (Residues: 69-143; Coverage: 52%)
Gene names: ATP5G2, ATP5MC2
Sequence domains: ATP synthase subunit C
ATP synthase peripheral stalk subunit OSCP, mitochondrial Chain: S
Molecule details ›
Chain: S
Length: 190 amino acids
Theoretical weight: 20.96 KDa
Source organism: Bos taurus
UniProt:
  • Canonical: P13621 (Residues: 24-213; Coverage: 89%)
Gene names: ATP5O, ATP5PO
Sequence domains: ATP synthase delta (OSCP) subunit
ATP synthase peripheral stalk subunit b, mitochondrial Chain: b
Molecule details ›
Chain: b
Length: 214 amino acids
Theoretical weight: 24.7 KDa
Source organism: Bos taurus
UniProt:
  • Canonical: P13619 (Residues: 43-256; Coverage: 84%)
Gene names: ATP5F, ATP5F1, ATP5PB
Sequence domains: Mitochondrial ATP synthase B chain precursor (ATP-synt_B)
ATP synthase peripheral stalk subunit F6, mitochondrial Chain: h
Molecule details ›
Chain: h
Length: 76 amino acids
Theoretical weight: 8.97 KDa
Source organism: Bos taurus
UniProt:
  • Canonical: P02721 (Residues: 33-108; Coverage: 70%)
Gene names: ATP5J, ATP5PF
Sequence domains: Mitochondrial ATP synthase coupling factor 6

Ligands and Environments

3 bound ligands:
1 modified residue:

Experiments and Validation Details

Entry percentile scores
Resolution: 3.47Å
Relevant EMDB volumes: EMD-11040
Expression system: Escherichia coli