6rdg

Electron Microscopy
2.9Å resolution

CryoEM structure of Polytomella F-ATP synthase, Primary rotary state 3, focussed refinement of F1 head and rotor

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero icosamer (preferred)
Entry contents:
7 distinct polypeptide molecules
Macromolecules (7 distinct):
ATP-synt_C domain-containing protein Chains: A, B, C, D, E, F, G, H, I, J
Molecule details ›
Chains: A, B, C, D, E, F, G, H, I, J
Length: 127 amino acids
Theoretical weight: 12.66 KDa
Source organism: Polytomella sp. Pringsheim 198.80
UniProt:
  • Canonical: D7P7X5 (Residues: 1-127; Coverage: 100%)
Sequence domains: ATP synthase subunit C
Mitochondrial ATP synthase subunit OSCP Chain: P
Molecule details ›
Chain: P
Length: 229 amino acids
Theoretical weight: 25.53 KDa
Source organism: Polytomella sp. Pringsheim 198.80
UniProt:
  • Canonical: D8V7I1 (Residues: 1-229; Coverage: 100%)
Sequence domains: ATP synthase delta (OSCP) subunit
epsilon: Polytomella F-ATP synthase epsilon subunit Chain: Q
Molecule details ›
Chain: Q
Length: 74 amino acids
Theoretical weight: 8.21 KDa
Source organism: Polytomella sp. Pringsheim 198.80
UniProt:
  • Canonical: A0A5H1ZR74 (Residues: 1-74; Coverage: 100%)
ATP-synt_DE_N domain-containing protein Chain: R
Molecule details ›
Chain: R
Length: 199 amino acids
Theoretical weight: 20.88 KDa
Source organism: Polytomella sp. Pringsheim 198.80
UniProt:
  • Canonical: D7P7X6 (Residues: 1-199; Coverage: 100%)
Sequence domains: ATP synthase, Delta/Epsilon chain, beta-sandwich domain
ATP synthase gamma chain, mitochondrial Chain: S
Molecule details ›
Chain: S
Length: 317 amino acids
Theoretical weight: 34.64 KDa
Source organism: Polytomella sp. Pringsheim 198.80
UniProt:
  • Canonical: Q4LDE7 (Residues: 1-317; Coverage: 100%)
Gene name: atp3
Sequence domains: ATP synthase
ATP synthase subunit alpha Chains: T, U, V
Molecule details ›
Chains: T, U, V
Length: 562 amino acids
Theoretical weight: 60.77 KDa
Source organism: Polytomella sp. Pringsheim 198.80
UniProt:
  • Canonical: A0ZW40 (Residues: 1-562; Coverage: 100%)
Gene name: atp1
Sequence domains:
ATP synthase subunit beta Chains: X, Y, Z
Molecule details ›
Chains: X, Y, Z
Length: 574 amino acids
Theoretical weight: 61.94 KDa
Source organism: Polytomella sp. Pringsheim 198.80
UniProt:
  • Canonical: A0ZW41 (Residues: 1-574; Coverage: 100%)
Gene name: atp2
Sequence domains:

Ligands and Environments

3 bound ligands:

No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 2.9Å
Relevant EMDB volumes: EMD-4817