6agy

X-ray diffraction
1.8Å resolution

Aspergillus fumigatus Af293 NDK

Released:
Source organism: Aspergillus fumigatus Af293
Primary publication:
Characterization of crystal structure and key residues of Aspergillus fumigatus nucleoside diphosphate kinase.
Biochem. Biophys. Res. Commun. 511 148-153 (2019)
PMID: 30773256

Function and Biology Details

Reaction catalysed:
ATP + nucleoside diphosphate = ADP + nucleoside triphosphate
Biochemical function:
Biological process:
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo hexamer (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Nucleoside diphosphate kinase Chain: A
Molecule details ›
Chain: A
Length: 161 amino acids
Theoretical weight: 18.02 KDa
Source organism: Aspergillus fumigatus Af293
Expression system: Escherichia coli
UniProt:
  • Canonical: Q7Z8P9 (Residues: 1-153; Coverage: 100%)
Gene names: AFUA_5G03490, ndk1
Sequence domains: Nucleoside diphosphate kinase

Ligands and Environments

No bound ligands

No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU MICROMAX-007 HF
Spacegroup: P312
Unit cell:
a: 70.756Å b: 70.756Å c: 53.095Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.141 0.137 0.17
Expression system: Escherichia coli