› 5zq6

X-ray diffraction
3.01Å resolution

SidE-Ubi-ADPr

Released:
DOI: 10.2210/pdb5zq6/pdb
PDB 5zq6 coloured by chain and viewed from the front.
PDB 5zq6 coloured by chain and viewed from the side.
PDB 5zq6 coloured by chain and viewed from the top.
Source organisms:
Entry authors: Wang Y, Gao A, Gao P

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
hetero tetramer (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Septation initiation protein Chains: A, C
Molecule details ›
Chains: A, C
Length: 845 amino acids
Theoretical weight: 96.81 KDa
Source organism: Legionella pneumophila
Expression system: Escherichia coli
UniProt:
  • Canonical: Q6BBR6 (Residues: 240-1076; Coverage: 55%)
Gene names: C3927_00465, laiD
Sequence domains:
Ubiquitin Chains: B, D
Molecule details ›
Chains: B, D
Length: 79 amino acids
Theoretical weight: 8.69 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: P0CG48 (Residues: 609-684; Coverage: 11%)
Gene name: UBC
Sequence domains: Ubiquitin family

Ligands and Environments

1 bound ligand:
Ligand ADP 2 x ADP
1 modified residue:
Ligand MSE 34 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRF BEAMLINE BL18U1
Spacegroup: P212121
Unit cell:
a: 92.322Å b: 128.003Å c: 191.065Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.183 0.18 0.232
Expression system: Escherichia coli

Quick links

Citations

9 review citations

Common Mechanism for Target Specificity of Protein- and DNA-Targeting ADP-Ribosyltransferases.
Yoshida et al. (2021)
8 more