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Structural basis of glycan specificity and identification of a novel glycan binding cavity in human P[19] rotavirus

Source organism: Human rotavirus A
Biochemical function: not assigned
Biological process: viral life cycle
Cellular component: viral capsid

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GO terms

Biochemical function:
  • not assigned
Biological process:
Cellular component:

Sequence family

Pfam Protein family (Pfam)
PF00426
Domain description: Outer Capsid protein VP4 (Hemagglutinin) Concanavalin-like domain
Occurring in:
  1. Outer capsid protein VP8*
The deposited structure of PDB entry 5yms contains 8 copies of Pfam domain PF00426 (Outer Capsid protein VP4 (Hemagglutinin) Concanavalin-like domain) in Outer capsid protein VP8*. Showing 1 copy in chain A.

InterPro InterPro annotations
IPR013320
Domain description: Concanavalin A-like lectin/glucanase domain superfamily
Occurring in:
  1. Outer capsid protein VP8*
IPR000416
Domain description: Haemagglutinin outer capsid protein VP4, concanavalin-like domain
Occurring in:
  1. Outer capsid protein VP8*

Structure domain

CATH CATH domain
2.60.120.200
Class: Mainly Beta
Architecture: Sandwich
Topology: Jelly Rolls
Homology: Jelly Rolls
Occurring in:
  1. Outer capsid protein VP8*
The deposited structure of PDB entry 5yms contains 8 copies of CATH domain 2.60.120.200 (Jelly Rolls) in Outer capsid protein VP8*. Showing 1 copy in chain A.

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