› 5y78

X-ray diffraction
2.1Å resolution

Crystal structure of the triose-phosphate/phosphate translocator in complex with inorganic phosphate

Released:
DOI: 10.2210/pdb5y78/pdb
PDB entry 5y78 coloured by chain, front view.
PDB entry 5y78 coloured by chain, side view.
PDB entry 5y78 coloured by chain, top view.
Source organism: Galdieria sulphuraria
Primary publication:
Structure of the triose-phosphate/phosphate translocator reveals the basis of substrate specificity.
Lee Y, Nishizawa T, Takemoto M, Kumazaki K, Yamashita K, Hirata K, Minoda A, Nagatoishi S, Tsumoto K, Ishitani R, Nureki O
Nat Plants 3 825-832 (2017)
PMID: 28970497

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-110167 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Sugar phosphate transporter domain-containing protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 329 amino acids
Theoretical weight: 36.58 KDa
Source organism: Galdieria sulphuraria
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: B5AJT1 (Residues: 91-410; Coverage: 78%)
Gene names: Gasu_48050, Gs48050.1
Sequence domains: Triose-phosphate Transporter family

Ligands and Environments

2 bound ligands:
Ligand PO4 2 x PO4
Ligand OLC 42 x OLC
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SPRING-8 BEAMLINE BL32XU
Spacegroup: P21212
Unit cell:
a: 106.55Å b: 164.97Å c: 41.42Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.196 0.195 0.226
Expression system: Spodoptera frugiperda

Quick links

Citations

5 review citations

Nucleotide Sugar Transporter SLC35 Family Structure and Function.
Hadley et al. (2019)
4 more

4 mentions without citation

KAMO: towards automated data processing for microcrystals.
Yamashita et al. (2018)
3 more