5xxb

Electron Microscopy
3.17Å resolution

Large subunit of Toxoplasma gondii ribosome

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero 44-mer (preferred)
Entry contents:
41 distinct polypeptide molecules
3 distinct RNA molecules
Macromolecules (44 distinct):
Ribosomal protein uL2 Chain: A
Molecule details ›
Chain: A
Length: 260 amino acids
Theoretical weight: 28.31 KDa
Source organism: Toxoplasma gondii
Ribosomal protein uL3 Chain: B
Molecule details ›
Chain: B
Length: 389 amino acids
Theoretical weight: 44.15 KDa
Source organism: Toxoplasma gondii
Ribosomal protein uL4 Chain: C
Molecule details ›
Chain: C
Length: 416 amino acids
Theoretical weight: 45.84 KDa
Source organism: Toxoplasma gondii
Ribosomal protein uL18 Chain: D
Molecule details ›
Chain: D
Length: 310 amino acids
Theoretical weight: 35.41 KDa
Source organism: Toxoplasma gondii
Ribosomal protein eL6 Chain: E
Molecule details ›
Chain: E
Length: 193 amino acids
Theoretical weight: 21.56 KDa
Source organism: Toxoplasma gondii
Ribosomal protein uL30 Chain: F
Molecule details ›
Chain: F
Length: 258 amino acids
Theoretical weight: 30.19 KDa
Source organism: Toxoplasma gondii
Ribosomal protein eL8 Chain: G
Molecule details ›
Chain: G
Length: 276 amino acids
Theoretical weight: 31.1 KDa
Source organism: Toxoplasma gondii
Ribosomal protein uL6 Chain: H
Molecule details ›
Chain: H
Length: 190 amino acids
Theoretical weight: 21.46 KDa
Source organism: Toxoplasma gondii
Ribosomal protein uL16 Chain: I
Molecule details ›
Chain: I
Length: 221 amino acids
Theoretical weight: 24.85 KDa
Source organism: Toxoplasma gondii
Ribosomal protein uL5 Chain: J
Molecule details ›
Chain: J
Length: 175 amino acids
Theoretical weight: 20.24 KDa
Source organism: Toxoplasma gondii
Ribosomal protein eL13 Chain: K
Molecule details ›
Chain: K
Length: 355 amino acids
Theoretical weight: 39.76 KDa
Source organism: Toxoplasma gondii
Ribosomal protein eL14 Chain: L
Molecule details ›
Chain: L
Length: 134 amino acids
Theoretical weight: 15.49 KDa
Source organism: Toxoplasma gondii
Ribosomal protein eL15 Chain: M
Molecule details ›
Chain: M
Length: 205 amino acids
Theoretical weight: 24.39 KDa
Source organism: Toxoplasma gondii
Ribosomal protein uL13 Chain: N
Molecule details ›
Chain: N
Length: 269 amino acids
Theoretical weight: 31.76 KDa
Source organism: Toxoplasma gondii
Ribosomal protein uL22 Chain: O
Molecule details ›
Chain: O
Length: 195 amino acids
Theoretical weight: 22.32 KDa
Source organism: Toxoplasma gondii
Ribosomal protein eL18 Chain: P
Molecule details ›
Chain: P
Length: 187 amino acids
Theoretical weight: 21.22 KDa
Source organism: Toxoplasma gondii
Ribosomal protein eL19 Chain: Q
Molecule details ›
Chain: Q
Length: 187 amino acids
Theoretical weight: 22.22 KDa
Source organism: Toxoplasma gondii
Ribosomal protein eL20 Chain: R
Molecule details ›
Chain: R
Length: 183 amino acids
Theoretical weight: 21.37 KDa
Source organism: Toxoplasma gondii
Ribosomal protein eL21 Chain: S
Molecule details ›
Chain: S
Length: 157 amino acids
Theoretical weight: 17.93 KDa
Source organism: Toxoplasma gondii
Ribosomal protein eL22 Chain: T
Molecule details ›
Chain: T
Length: 133 amino acids
Theoretical weight: 15.1 KDa
Source organism: Toxoplasma gondii
Ribosomal protein uL14 Chain: U
Molecule details ›
Chain: U
Length: 139 amino acids
Theoretical weight: 14.84 KDa
Source organism: Toxoplasma gondii
Ribosomal protein eL24 Chain: V
Molecule details ›
Chain: V
Length: 155 amino acids
Theoretical weight: 17.64 KDa
Source organism: Toxoplasma gondii
Ribosomal protein uL23 Chain: W
Molecule details ›
Chain: W
Length: 167 amino acids
Theoretical weight: 18.6 KDa
Source organism: Toxoplasma gondii
Ribosomal protein uL24 Chain: X
Molecule details ›
Chain: X
Length: 141 amino acids
Theoretical weight: 16.35 KDa
Source organism: Toxoplasma gondii
Ribosomal protein eL27 Chain: Y
Molecule details ›
Chain: Y
Length: 146 amino acids
Theoretical weight: 16.84 KDa
Source organism: Toxoplasma gondii
Ribosomal protein uL15 Chain: Z
Molecule details ›
Chain: Z
Length: 147 amino acids
Theoretical weight: 16.38 KDa
Source organism: Toxoplasma gondii
Ribosomal protein eL29 Chain: a
Molecule details ›
Chain: a
Length: 54 amino acids
Theoretical weight: 6.39 KDa
Source organism: Toxoplasma gondii
Ribosomal protein eL30 Chain: b
Molecule details ›
Chain: b
Length: 108 amino acids
Theoretical weight: 11.68 KDa
Source organism: Toxoplasma gondii
Ribosomal protein eL31 Chain: c
Molecule details ›
Chain: c
Length: 120 amino acids
Theoretical weight: 14.39 KDa
Source organism: Toxoplasma gondii
Ribosomal protein eL32 Chain: d
Molecule details ›
Chain: d
Length: 134 amino acids
Theoretical weight: 15.65 KDa
Source organism: Toxoplasma gondii
Ribosomal protein eL33 Chain: e
Molecule details ›
Chain: e
Length: 112 amino acids
Theoretical weight: 12.87 KDa
Source organism: Toxoplasma gondii
Ribosomal protein eL34 Chain: f
Molecule details ›
Chain: f
Length: 134 amino acids
Theoretical weight: 15.43 KDa
Source organism: Toxoplasma gondii
Ribosomal protein uL29 Chain: g
Molecule details ›
Chain: g
Length: 123 amino acids
Theoretical weight: 14.23 KDa
Source organism: Toxoplasma gondii
Ribosomal protein eL36 Chain: h
Molecule details ›
Chain: h
Length: 101 amino acids
Theoretical weight: 11.44 KDa
Source organism: Toxoplasma gondii
Ribosomal protein eL37 Chain: i
Molecule details ›
Chain: i
Length: 98 amino acids
Theoretical weight: 11.26 KDa
Source organism: Toxoplasma gondii
Ribosomal protein eL38 Chain: j
Molecule details ›
Chain: j
Length: 84 amino acids
Theoretical weight: 9.61 KDa
Source organism: Toxoplasma gondii
Ribosomal protein eL39 Chain: k
Molecule details ›
Chain: k
Length: 51 amino acids
Theoretical weight: 6.17 KDa
Source organism: Toxoplasma gondii
Ribosomal protein eL40 Chain: l
Molecule details ›
Chain: l
Length: 129 amino acids
Theoretical weight: 14.71 KDa
Source organism: Toxoplasma gondii
Ribosomal protein eL42 Chain: n
Molecule details ›
Chain: n
Length: 105 amino acids
Theoretical weight: 12.1 KDa
Source organism: Toxoplasma gondii
Ribosomal protein eL43 Chain: o
Molecule details ›
Chain: o
Length: 96 amino acids
Theoretical weight: 10.43 KDa
Source organism: Toxoplasma gondii
Ribosomal protein eL28 Chain: p
Molecule details ›
Chain: p
Length: 129 amino acids
Theoretical weight: 14.79 KDa
Source organism: Toxoplasma gondii
25S ribosomal RNA Chain: 1
Molecule details ›
Chain: 1
Length: 3477 nucleotides
Theoretical weight: 1120.15 KDa
Sequence domains: Eukaryotic large subunit ribosomal RNA
5S ribosomal RNA Chain: 3
Molecule details ›
Chain: 3
Length: 124 nucleotides
Theoretical weight: 39.92 KDa
Sequence domains: 5S ribosomal RNA
5.8S ribosomal RNA Chain: 4
Molecule details ›
Chain: 4
Length: 158 nucleotides
Theoretical weight: 50.79 KDa
Sequence domains: 5.8S ribosomal RNA

Ligands and Environments

No bound ligands

No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.17Å
Relevant EMDB volumes: EMD-6778